miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9460 3' -52.1 NC_002531.1 + 103877 0.66 0.978101
Target:  5'- -gUCAUCUaACAGCGGgucagcuGCAGGCucuGGCUc -3'
miRNA:   3'- gaAGUAGAgUGUCGUC-------UGUCUG---CCGG- -5'
9460 3' -52.1 NC_002531.1 + 113439 0.66 0.975845
Target:  5'- --cCA-CUCGCcGCAGACGGuCaGCCa -3'
miRNA:   3'- gaaGUaGAGUGuCGUCUGUCuGcCGG- -5'
9460 3' -52.1 NC_002531.1 + 104827 0.66 0.975845
Target:  5'- --aCGUCuUCACAGCaAGACuugAGAgcagaGGCCa -3'
miRNA:   3'- gaaGUAG-AGUGUCG-UCUG---UCUg----CCGG- -5'
9460 3' -52.1 NC_002531.1 + 122501 0.66 0.973143
Target:  5'- --cCAUCUUguaugAUAGCGaACAgGGCGGCCa -3'
miRNA:   3'- gaaGUAGAG-----UGUCGUcUGU-CUGCCGG- -5'
9460 3' -52.1 NC_002531.1 + 48946 0.66 0.970229
Target:  5'- -cUCuaacCUCuCGGCGacuGACGGugGGCCu -3'
miRNA:   3'- gaAGua--GAGuGUCGU---CUGUCugCCGG- -5'
9460 3' -52.1 NC_002531.1 + 60104 0.66 0.969926
Target:  5'- -cUCAUCUCugAGCugguaguugaggaGGGCAu-CGGCUg -3'
miRNA:   3'- gaAGUAGAGugUCG-------------UCUGUcuGCCGG- -5'
9460 3' -52.1 NC_002531.1 + 22136 0.71 0.827411
Target:  5'- -cUCGUCUCGCAGCAGGagcucCAGuACaGCUc -3'
miRNA:   3'- gaAGUAGAGUGUCGUCU-----GUC-UGcCGG- -5'
9460 3' -52.1 NC_002531.1 + 106055 0.71 0.818558
Target:  5'- ---aGUUUCACGGU--GCAGAUGGCCu -3'
miRNA:   3'- gaagUAGAGUGUCGucUGUCUGCCGG- -5'
9460 3' -52.1 NC_002531.1 + 69510 0.71 0.818558
Target:  5'- ---aGUCUCGgAGCucuuCAGGCGGCCu -3'
miRNA:   3'- gaagUAGAGUgUCGucu-GUCUGCCGG- -5'
9460 3' -52.1 NC_002531.1 + 94033 0.71 0.809522
Target:  5'- -gUUAUCUUGCAGCGGGcCAGGCuGGUg -3'
miRNA:   3'- gaAGUAGAGUGUCGUCU-GUCUG-CCGg -5'
9460 3' -52.1 NC_002531.1 + 45104 0.72 0.790938
Target:  5'- -cUCAUa--GCAGCaAGACAGugGGCa -3'
miRNA:   3'- gaAGUAgagUGUCG-UCUGUCugCCGg -5'
9460 3' -52.1 NC_002531.1 + 31961 0.72 0.781411
Target:  5'- uUUCAUUUCAgccaacCAGCGGAUGGGCGGauuCCa -3'
miRNA:   3'- gAAGUAGAGU------GUCGUCUGUCUGCC---GG- -5'
9460 3' -52.1 NC_002531.1 + 37042 0.74 0.658741
Target:  5'- cCUUCAccuUUUC-CAGCGGucaGCAGGCGGCUa -3'
miRNA:   3'- -GAAGU---AGAGuGUCGUC---UGUCUGCCGG- -5'
9460 3' -52.1 NC_002531.1 + 36994 0.74 0.648133
Target:  5'- gUUCuUCUCGagaGGCGGGCAGugGGUg -3'
miRNA:   3'- gAAGuAGAGUg--UCGUCUGUCugCCGg -5'
9460 3' -52.1 NC_002531.1 + 61131 0.79 0.39524
Target:  5'- --aCGUCUCcaACAGCAGACAGAgauguaggagcccaUGGCCa -3'
miRNA:   3'- gaaGUAGAG--UGUCGUCUGUCU--------------GCCGG- -5'
9460 3' -52.1 NC_002531.1 + 124438 1.12 0.003421
Target:  5'- gCUUCAUCUCACAGCAGACAGACGGCCu -3'
miRNA:   3'- -GAAGUAGAGUGUCGUCUGUCUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.