miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9462 3' -61.4 NC_002531.1 + 82344 0.66 0.67812
Target:  5'- aCUaCCCuccGGGAgCUcGGGGCcgUGGCCa -3'
miRNA:   3'- -GGcGGGu--UCCUgGAuCCCCGa-GCCGG- -5'
9462 3' -61.4 NC_002531.1 + 11454 0.66 0.638704
Target:  5'- -aGCCgCAGGGcCCaaUAGGGGCUUuaGaGCCc -3'
miRNA:   3'- ggCGG-GUUCCuGG--AUCCCCGAG--C-CGG- -5'
9462 3' -61.4 NC_002531.1 + 46778 0.66 0.628819
Target:  5'- uUGUCUAAGGAUCc---GGCUUGGCCu -3'
miRNA:   3'- gGCGGGUUCCUGGauccCCGAGCCGG- -5'
9462 3' -61.4 NC_002531.1 + 38059 0.67 0.609064
Target:  5'- aCGCCCc---ACUUGGGGGCgagCGGUg -3'
miRNA:   3'- gGCGGGuuccUGGAUCCCCGa--GCCGg -5'
9462 3' -61.4 NC_002531.1 + 56514 0.67 0.599207
Target:  5'- uUGUCUAAGG-CCUGGuGGGUUcucaCGGCUg -3'
miRNA:   3'- gGCGGGUUCCuGGAUC-CCCGA----GCCGG- -5'
9462 3' -61.4 NC_002531.1 + 115698 0.67 0.589373
Target:  5'- gCCaGCCCGGGGAC---GGGGC-CaGCCc -3'
miRNA:   3'- -GG-CGGGUUCCUGgauCCCCGaGcCGG- -5'
9462 3' -61.4 NC_002531.1 + 100973 0.68 0.531183
Target:  5'- gUGUCUuuuuGGGGACCcugGGGGGCUUGGaCg -3'
miRNA:   3'- gGCGGG----UUCCUGGa--UCCCCGAGCCgG- -5'
9462 3' -61.4 NC_002531.1 + 34537 0.69 0.502854
Target:  5'- aUCGUCCuggGGGGCggGGGGuGCUCcagGGCCu -3'
miRNA:   3'- -GGCGGGu--UCCUGgaUCCC-CGAG---CCGG- -5'
9462 3' -61.4 NC_002531.1 + 118564 0.69 0.483422
Target:  5'- -gGCCCgAGGGACCagAGGGGC-CugaagaagacgagGGCCc -3'
miRNA:   3'- ggCGGG-UUCCUGGa-UCCCCGaG-------------CCGG- -5'
9462 3' -61.4 NC_002531.1 + 119241 0.69 0.475204
Target:  5'- -gGCCCgAGGGACC-AGGGG---GGCCa -3'
miRNA:   3'- ggCGGG-UUCCUGGaUCCCCgagCCGG- -5'
9462 3' -61.4 NC_002531.1 + 119427 0.69 0.475204
Target:  5'- -gGCCCgAGGGACC-AGGGG---GGCCa -3'
miRNA:   3'- ggCGGG-UUCCUGGaUCCCCgagCCGG- -5'
9462 3' -61.4 NC_002531.1 + 118948 0.69 0.464358
Target:  5'- -gGCCCugAGGGACCagAGGGGCcugaaggagaaGGCCc -3'
miRNA:   3'- ggCGGG--UUCCUGGa-UCCCCGag---------CCGG- -5'
9462 3' -61.4 NC_002531.1 + 118690 0.69 0.464358
Target:  5'- -gGCCCugAGGGACCagAGGGGCcugaaggagaaGGCCc -3'
miRNA:   3'- ggCGGG--UUCCUGGa-UCCCCGag---------CCGG- -5'
9462 3' -61.4 NC_002531.1 + 30313 0.7 0.447453
Target:  5'- uCUGUCCGAGGAacaagcaacaacaCUgugAGGgaagaGGCUCGGCCu -3'
miRNA:   3'- -GGCGGGUUCCU-------------GGa--UCC-----CCGAGCCGG- -5'
9462 3' -61.4 NC_002531.1 + 35437 0.71 0.373144
Target:  5'- aCGCCCGAGGAgCUGa-GGUUCaGCCa -3'
miRNA:   3'- gGCGGGUUCCUgGAUccCCGAGcCGG- -5'
9462 3' -61.4 NC_002531.1 + 118403 0.73 0.287027
Target:  5'- -aGCCCAGauGGGCC-AGGGGCUCaagaGGUCc -3'
miRNA:   3'- ggCGGGUU--CCUGGaUCCCCGAG----CCGG- -5'
9462 3' -61.4 NC_002531.1 + 129704 0.75 0.227865
Target:  5'- -aGUCCAAauGGCCUAGGaGCUCGGCCu -3'
miRNA:   3'- ggCGGGUUc-CUGGAUCCcCGAGCCGG- -5'
9462 3' -61.4 NC_002531.1 + 109825 0.75 0.222553
Target:  5'- -gGCCCGuuaggaccAGGGCCUAGGuGGCcCGGUCc -3'
miRNA:   3'- ggCGGGU--------UCCUGGAUCC-CCGaGCCGG- -5'
9462 3' -61.4 NC_002531.1 + 129621 1.04 0.001995
Target:  5'- cCCGCCCAAGG-CCUAGGGGCUCGGCCu -3'
miRNA:   3'- -GGCGGGUUCCuGGAUCCCCGAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.