Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9464 | 5' | -52.7 | NC_002531.1 | + | 120 | 1.11 | 0.002991 |
Target: 5'- aGAAAGAAGCGCCGCGCAGCAGAUAGCc -3' miRNA: 3'- -CUUUCUUCGCGGCGCGUCGUCUAUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 18156 | 0.66 | 0.96369 |
Target: 5'- uGGAAGAgcuaucccgcgcguGGUGCCGUgaGCAGCAccgAGCc -3' miRNA: 3'- -CUUUCU--------------UCGCGGCG--CGUCGUcuaUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 45388 | 0.66 | 0.944509 |
Target: 5'- aGAAGuAGGCGaCGCGCGGCGc--GGCa -3' miRNA: 3'- cUUUC-UUCGCgGCGCGUCGUcuaUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 93918 | 0.67 | 0.917893 |
Target: 5'- -----uGGCaGCgGCGgAGCAGAUGGUg -3' miRNA: 3'- cuuucuUCG-CGgCGCgUCGUCUAUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 93646 | 0.68 | 0.891919 |
Target: 5'- uGGAAGcAAGUaCCGC-CAGCAGAgGGCc -3' miRNA: 3'- -CUUUC-UUCGcGGCGcGUCGUCUaUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 81928 | 0.69 | 0.87742 |
Target: 5'- cAGAGggGCGCUGCGCuG-AGGUGu- -3' miRNA: 3'- cUUUCuuCGCGGCGCGuCgUCUAUcg -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 106049 | 0.69 | 0.87742 |
Target: 5'- uGGAGAAGUuUCaCGguGCAGAUGGCc -3' miRNA: 3'- cUUUCUUCGcGGcGCguCGUCUAUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 125774 | 0.69 | 0.85389 |
Target: 5'- cGGAAGAGGgGCCucgaGUGCAGUGGGcAGUu -3' miRNA: 3'- -CUUUCUUCgCGG----CGCGUCGUCUaUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 32311 | 0.69 | 0.845598 |
Target: 5'- -uGAGuGGCGCU-CGCAGCAGcUAGUg -3' miRNA: 3'- cuUUCuUCGCGGcGCGUCGUCuAUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 35218 | 0.74 | 0.626348 |
Target: 5'- gGAAuAGAAGUGCUGaGgGGUAGAUAGCg -3' miRNA: 3'- -CUU-UCUUCGCGGCgCgUCGUCUAUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 90238 | 0.74 | 0.604946 |
Target: 5'- uGGAcGAAcGCGCCGCGCGGCuGGAUGu- -3' miRNA: 3'- -CUUuCUU-CGCGGCGCGUCG-UCUAUcg -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 68079 | 0.7 | 0.810388 |
Target: 5'- uGGAGGAcagGGCGCUGUGCAGUgagcccAGGUAcuGCu -3' miRNA: 3'- -CUUUCU---UCGCGGCGCGUCG------UCUAU--CG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 236 | 0.68 | 0.911786 |
Target: 5'- -uGAGGAGCcUCGCaCGGCAGAgAGCc -3' miRNA: 3'- cuUUCUUCGcGGCGcGUCGUCUaUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 74614 | 0.67 | 0.92374 |
Target: 5'- cAGAGcGGUGCUGCuGCGGCuGGUcGCa -3' miRNA: 3'- cUUUCuUCGCGGCG-CGUCGuCUAuCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 12624 | 0.67 | 0.929324 |
Target: 5'- gGGGAGAAgGCgGCCGCGUAGgcUAGGU-GCu -3' miRNA: 3'- -CUUUCUU-CG-CGGCGCGUC--GUCUAuCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 32487 | 0.66 | 0.944509 |
Target: 5'- -cAGGGAGUGuuGCuCAGCAGcucacUAGCu -3' miRNA: 3'- cuUUCUUCGCggCGcGUCGUCu----AUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 284 | 0.66 | 0.944509 |
Target: 5'- gGAGAGggGCuaucuGCUGCGCGGCGc----- -3' miRNA: 3'- -CUUUCuuCG-----CGGCGCGUCGUcuaucg -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 124599 | 0.66 | 0.949054 |
Target: 5'- ---cGAcGUGCCuuucGCcCAGCAGGUGGCu -3' miRNA: 3'- cuuuCUuCGCGG----CGcGUCGUCUAUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 97384 | 0.66 | 0.952926 |
Target: 5'- aAGAGAGGUGCCGUGUAGaguuuGAaaacauuUAGUa -3' miRNA: 3'- cUUUCUUCGCGGCGCGUCgu---CU-------AUCG- -5' |
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9464 | 5' | -52.7 | NC_002531.1 | + | 37784 | 0.66 | 0.960809 |
Target: 5'- -cAAGAgucccGGCGCaGCGCAGCccuguacAGAaAGCa -3' miRNA: 3'- cuUUCU-----UCGCGgCGCGUCG-------UCUaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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