miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9465 5' -51.2 NC_002531.1 + 42870 0.66 0.990678
Target:  5'- cCAAGgGGAUGGAGAUggcaUCGUGUGGg -3'
miRNA:   3'- uGUUUgCCUGUCUUUGug--GGCACGCC- -5'
9465 5' -51.2 NC_002531.1 + 48912 0.66 0.987893
Target:  5'- cACAaaGACGGACGuAGAgGCCCGgGCa- -3'
miRNA:   3'- -UGU--UUGCCUGUcUUUgUGGGCaCGcc -5'
9465 5' -51.2 NC_002531.1 + 84931 0.67 0.980218
Target:  5'- aGCGAGCGGAgGGAGcgggccucuguuuGUAUCCGUGCu- -3'
miRNA:   3'- -UGUUUGCCUgUCUU-------------UGUGGGCACGcc -5'
9465 5' -51.2 NC_002531.1 + 118127 0.68 0.970005
Target:  5'- cCAGAUGGAacugaaGGAGAagGCCCaUGCGGa -3'
miRNA:   3'- uGUUUGCCUg-----UCUUUg-UGGGcACGCC- -5'
9465 5' -51.2 NC_002531.1 + 118058 0.68 0.970005
Target:  5'- cCAGAUGGAacugaaGGAGAagGCCCaUGCGGa -3'
miRNA:   3'- uGUUUGCCUg-----UCUUUg-UGGGcACGCC- -5'
9465 5' -51.2 NC_002531.1 + 26164 0.68 0.959919
Target:  5'- gGCAauAugGGuucCAGggGCGagCGUGCGGg -3'
miRNA:   3'- -UGU--UugCCu--GUCuuUGUggGCACGCC- -5'
9465 5' -51.2 NC_002531.1 + 82425 0.68 0.959919
Target:  5'- gACAAGCuGGcCAGAGACACUCuggaGUGUGa -3'
miRNA:   3'- -UGUUUG-CCuGUCUUUGUGGG----CACGCc -5'
9465 5' -51.2 NC_002531.1 + 16457 0.69 0.93833
Target:  5'- uUggGCGGGCugggaaAGAGACcuuCCUGUGUGGu -3'
miRNA:   3'- uGuuUGCCUG------UCUUUGu--GGGCACGCC- -5'
9465 5' -51.2 NC_002531.1 + 34436 0.73 0.821532
Target:  5'- cCAAACGGcaacaguGCGGggGCAUCCccguuugcuggguggGUGCGGg -3'
miRNA:   3'- uGUUUGCC-------UGUCuuUGUGGG---------------CACGCC- -5'
9465 5' -51.2 NC_002531.1 + 475 0.91 0.111079
Target:  5'- aACAAA-GGcACAGAAACACCCGUGCGGu -3'
miRNA:   3'- -UGUUUgCC-UGUCUUUGUGGGCACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.