miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9466 3' -54.8 NC_002531.1 + 34781 0.66 0.922064
Target:  5'- ----cGCCGuCCCACagaaaCUUGaGACGGCg -3'
miRNA:   3'- guaguCGGUuGGGUGg----GAAC-CUGUCG- -5'
9466 3' -54.8 NC_002531.1 + 78176 0.66 0.922064
Target:  5'- uGUgGGCCAACCCGgCCaaugGGACc-- -3'
miRNA:   3'- gUAgUCGGUUGGGUgGGaa--CCUGucg -5'
9466 3' -54.8 NC_002531.1 + 29478 0.66 0.903927
Target:  5'- aGUUuGCCGAuCCCAUCCgaGGAgUAGCu -3'
miRNA:   3'- gUAGuCGGUU-GGGUGGGaaCCU-GUCG- -5'
9466 3' -54.8 NC_002531.1 + 82630 0.67 0.883584
Target:  5'- gCAUCAGCUGGCCCcuaaACUCgUUGauGCAGCg -3'
miRNA:   3'- -GUAGUCGGUUGGG----UGGG-AACc-UGUCG- -5'
9466 3' -54.8 NC_002531.1 + 49064 0.67 0.861919
Target:  5'- gGUgGGCCAGauauCUCACCCgccagggcugguacaUGGACAGUa -3'
miRNA:   3'- gUAgUCGGUU----GGGUGGGa--------------ACCUGUCG- -5'
9466 3' -54.8 NC_002531.1 + 96719 0.68 0.836741
Target:  5'- --cCAGCCAcGCCUuCCCUaaagucUGGGCAGg -3'
miRNA:   3'- guaGUCGGU-UGGGuGGGA------ACCUGUCg -5'
9466 3' -54.8 NC_002531.1 + 19643 0.69 0.792287
Target:  5'- --aCAGCCAuucccCCCACCgcauuCUaccUGGACAGUg -3'
miRNA:   3'- guaGUCGGUu----GGGUGG-----GA---ACCUGUCG- -5'
9466 3' -54.8 NC_002531.1 + 130204 0.69 0.763724
Target:  5'- --aCAGggacccccCCAACCC-CCCUgacgGGGCGGCc -3'
miRNA:   3'- guaGUC--------GGUUGGGuGGGAa---CCUGUCG- -5'
9466 3' -54.8 NC_002531.1 + 23850 0.69 0.75787
Target:  5'- -cUCAGCCAACUCAacaucccauauucugUCCacuuuauagUGGACAGCc -3'
miRNA:   3'- guAGUCGGUUGGGU---------------GGGa--------ACCUGUCG- -5'
9466 3' -54.8 NC_002531.1 + 69611 0.7 0.733051
Target:  5'- --cUAGCCGugagagcACCaCAUCCUcGGACAGCu -3'
miRNA:   3'- guaGUCGGU-------UGG-GUGGGAaCCUGUCG- -5'
9466 3' -54.8 NC_002531.1 + 84813 0.71 0.651573
Target:  5'- --aCAGCCuuACuCUGCCCgaaGGACAGCg -3'
miRNA:   3'- guaGUCGGu-UG-GGUGGGaa-CCUGUCG- -5'
9466 3' -54.8 NC_002531.1 + 125280 0.73 0.567981
Target:  5'- aCAUCuGCCAACCaGCCCcUGaGACuGCa -3'
miRNA:   3'- -GUAGuCGGUUGGgUGGGaAC-CUGuCG- -5'
9466 3' -54.8 NC_002531.1 + 50573 0.73 0.557667
Target:  5'- --gCAGCCuAACacaCGCCCUUGGcaACAGCc -3'
miRNA:   3'- guaGUCGG-UUGg--GUGGGAACC--UGUCG- -5'
9466 3' -54.8 NC_002531.1 + 12506 0.73 0.537208
Target:  5'- gGUUAGCCAGCCCAUgCUgcaGAUAGUa -3'
miRNA:   3'- gUAGUCGGUUGGGUGgGAac-CUGUCG- -5'
9466 3' -54.8 NC_002531.1 + 114329 0.74 0.517014
Target:  5'- --cUAGCCAGCCaGCCCggGGACGGg -3'
miRNA:   3'- guaGUCGGUUGGgUGGGaaCCUGUCg -5'
9466 3' -54.8 NC_002531.1 + 114358 0.74 0.517014
Target:  5'- --cUAGCCAGCCaGCCCggGGACGGg -3'
miRNA:   3'- guaGUCGGUUGGgUGGGaaCCUGUCg -5'
9466 3' -54.8 NC_002531.1 + 114387 0.74 0.517014
Target:  5'- --cUAGCCAGCCaGCCCggGGACGGg -3'
miRNA:   3'- guaGUCGGUUGGgUGGGaaCCUGUCg -5'
9466 3' -54.8 NC_002531.1 + 114300 0.74 0.517014
Target:  5'- --cUAGCCAGCCaGCCCggGGACGGg -3'
miRNA:   3'- guaGUCGGUUGGgUGGGaaCCUGUCg -5'
9466 3' -54.8 NC_002531.1 + 114155 0.74 0.517014
Target:  5'- --cUAGCCAGCCaGCCCggGGACGGg -3'
miRNA:   3'- guaGUCGGUUGGgUGGGaaCCUGUCg -5'
9466 3' -54.8 NC_002531.1 + 114126 0.74 0.517014
Target:  5'- --cUAGCCAGCCaGCCCggGGACGGg -3'
miRNA:   3'- guaGUCGGUUGGgUGGGaaCCUGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.