Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9467 | 3' | -59.5 | NC_002531.1 | + | 103563 | 0.66 | 0.70778 |
|
Target: 5'- -gGGAgUGGUGGCggCGCC-GGAGGCGCc -3' miRNA: 3'- ugUCU-GUCACUG--GCGGaCCUCCGCGa -5' |
|||||||
| 9467 | 3' | -59.5 | NC_002531.1 | + | 90985 | 0.66 | 0.70778 |
|
Target: 5'- cCAGugAgcGUGGCgGCCuauaUGGAGGUGUg -3' miRNA: 3'- uGUCugU--CACUGgCGG----ACCUCCGCGa -5' |
|||||||
| 9467 | 3' | -59.5 | NC_002531.1 | + | 45748 | 0.68 | 0.576105 |
|
Target: 5'- ---aACAGUGugCGCUUuGAGGUGCUa -3' miRNA: 3'- ugucUGUCACugGCGGAcCUCCGCGA- -5' |
|||||||
| 9467 | 3' | -59.5 | NC_002531.1 | + | 103957 | 0.69 | 0.535195 |
|
Target: 5'- gGCAG-CGGUGgaaguggGCCcCCUGGAGGCaGCg -3' miRNA: 3'- -UGUCuGUCAC-------UGGcGGACCUCCG-CGa -5' |
|||||||
| 9467 | 3' | -59.5 | NC_002531.1 | + | 99194 | 0.69 | 0.506883 |
|
Target: 5'- aGCGGACAGgGACUGUgaGGGGG-GCUc -3' miRNA: 3'- -UGUCUGUCaCUGGCGgaCCUCCgCGA- -5' |
|||||||
| 9467 | 3' | -59.5 | NC_002531.1 | + | 123367 | 0.71 | 0.423639 |
|
Target: 5'- cAUAGACAgauGUGGCaaugGCCUGGuGGUGCa -3' miRNA: 3'- -UGUCUGU---CACUGg---CGGACCuCCGCGa -5' |
|||||||
| 9467 | 3' | -59.5 | NC_002531.1 | + | 12186 | 1.06 | 0.001595 |
|
Target: 5'- aACAGACAGUGACCGCCUGGAGGCGCUc -3' miRNA: 3'- -UGUCUGUCACUGGCGGACCUCCGCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home