miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9467 5' -54 NC_002531.1 + 58137 0.66 0.945147
Target:  5'- aGAGCGCGCUuuGGGU--UCCAa--- -3'
miRNA:   3'- cCUUGCGCGAggUCCGguAGGUauag -5'
9467 5' -54 NC_002531.1 + 51931 0.66 0.940473
Target:  5'- aGAGCa-GgUCCGGGCCAUCaaAUGUCa -3'
miRNA:   3'- cCUUGcgCgAGGUCCGGUAGg-UAUAG- -5'
9467 5' -54 NC_002531.1 + 98491 0.66 0.935548
Target:  5'- ----aGCuCUCCAGGgCAgCCAUAUCa -3'
miRNA:   3'- ccuugCGcGAGGUCCgGUaGGUAUAG- -5'
9467 5' -54 NC_002531.1 + 34551 0.66 0.935548
Target:  5'- cGGGGgGUGCUCCAgGGCCugaCAUuguagaAUCa -3'
miRNA:   3'- -CCUUgCGCGAGGU-CCGGuagGUA------UAG- -5'
9467 5' -54 NC_002531.1 + 109963 0.67 0.919265
Target:  5'- -uAACGgGcCUCCAgGGCC-UCUAUAUCc -3'
miRNA:   3'- ccUUGCgC-GAGGU-CCGGuAGGUAUAG- -5'
9467 5' -54 NC_002531.1 + 46262 0.67 0.887131
Target:  5'- aGGcCGCGUUCCAGGgCGUCgAUGc- -3'
miRNA:   3'- cCUuGCGCGAGGUCCgGUAGgUAUag -5'
9467 5' -54 NC_002531.1 + 25485 0.68 0.879977
Target:  5'- gGGAGUGCGC-CgGGGCCAUCUg---- -3'
miRNA:   3'- -CCUUGCGCGaGgUCCGGUAGGuauag -5'
9467 5' -54 NC_002531.1 + 19060 0.68 0.864977
Target:  5'- -cAACGCgaggaGCUCCAGGUCGaCCcUAUCa -3'
miRNA:   3'- ccUUGCG-----CGAGGUCCGGUaGGuAUAG- -5'
9467 5' -54 NC_002531.1 + 55662 0.68 0.864977
Target:  5'- uGAugGUauacuguagcagGCUCCcguuGGCCAUCCAggGUCc -3'
miRNA:   3'- cCUugCG------------CGAGGu---CCGGUAGGUa-UAG- -5'
9467 5' -54 NC_002531.1 + 25546 0.69 0.832377
Target:  5'- aGGACGCGCagguagAGGCCGUCCAa--- -3'
miRNA:   3'- cCUUGCGCGagg---UCCGGUAGGUauag -5'
9467 5' -54 NC_002531.1 + 12289 0.69 0.814894
Target:  5'- cGGGuCGCGCgCCAGGCCcccAUCCcUAa- -3'
miRNA:   3'- -CCUuGCGCGaGGUCCGG---UAGGuAUag -5'
9467 5' -54 NC_002531.1 + 67017 0.71 0.697948
Target:  5'- gGGAAUGUGCUCCAucGCCGUUCAc--- -3'
miRNA:   3'- -CCUUGCGCGAGGUc-CGGUAGGUauag -5'
9467 5' -54 NC_002531.1 + 12344 0.72 0.645755
Target:  5'- aGAGCGC-CUCCAGGCgGUCacUGUCu -3'
miRNA:   3'- cCUUGCGcGAGGUCCGgUAGguAUAG- -5'
9467 5' -54 NC_002531.1 + 121757 0.75 0.511181
Target:  5'- aGGAGgGCGCggagagCCGGGCUGUCCcccuggguguGUAUCa -3'
miRNA:   3'- -CCUUgCGCGa-----GGUCCGGUAGG----------UAUAG- -5'
9467 5' -54 NC_002531.1 + 12220 1.11 0.002718
Target:  5'- uGGAACGCGCUCCAGGCCAUCCAUAUCc -3'
miRNA:   3'- -CCUUGCGCGAGGUCCGGUAGGUAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.