miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9468 3' -52.2 NC_002531.1 + 101833 0.66 0.975662
Target:  5'- cGGGAaugaagAGCCCUuCUcuUCUCUGCUa -3'
miRNA:   3'- -UCCUgua---UCGGGAcGGuuAGAGAUGG- -5'
9468 3' -52.2 NC_002531.1 + 33807 0.66 0.975662
Target:  5'- uGGAgUGUagcAGCCUUGgaAGUCUCUGCCu -3'
miRNA:   3'- uCCU-GUA---UCGGGACggUUAGAGAUGG- -5'
9468 3' -52.2 NC_002531.1 + 68302 0.66 0.972931
Target:  5'- uGGGCAUgagcAGCCUgaacaUGCauacgcguuUCUCUGCCa -3'
miRNA:   3'- uCCUGUA----UCGGG-----ACGguu------AGAGAUGG- -5'
9468 3' -52.2 NC_002531.1 + 49226 0.66 0.972931
Target:  5'- aAGGGCAgAGCaauuCCUcuacGaCCAcUCUCUGCCa -3'
miRNA:   3'- -UCCUGUaUCG----GGA----C-GGUuAGAGAUGG- -5'
9468 3' -52.2 NC_002531.1 + 27249 0.66 0.969985
Target:  5'- ------cAGCCauaaaUGCCAGUCUcCUACCa -3'
miRNA:   3'- uccuguaUCGGg----ACGGUUAGA-GAUGG- -5'
9468 3' -52.2 NC_002531.1 + 51927 0.66 0.966817
Target:  5'- cAGGuCcgGGCCaucaaaUGUCAGUCUCUaagagacggcaGCCa -3'
miRNA:   3'- -UCCuGuaUCGGg-----ACGGUUAGAGA-----------UGG- -5'
9468 3' -52.2 NC_002531.1 + 29657 0.67 0.951795
Target:  5'- cAGGACAcuugUAGCUUUGCCAg---CUACUc -3'
miRNA:   3'- -UCCUGU----AUCGGGACGGUuagaGAUGG- -5'
9468 3' -52.2 NC_002531.1 + 119277 0.67 0.947425
Target:  5'- aAGGAgAUAGCCCagauggGCCAGaugCUCaagagggGCCc -3'
miRNA:   3'- -UCCUgUAUCGGGa-----CGGUUa--GAGa------UGG- -5'
9468 3' -52.2 NC_002531.1 + 118411 0.67 0.942801
Target:  5'- aAGGAgAUAGCCCagauggGCCAGgggCUCa--- -3'
miRNA:   3'- -UCCUgUAUCGGGa-----CGGUUa--GAGaugg -5'
9468 3' -52.2 NC_002531.1 + 80892 0.68 0.932252
Target:  5'- uGGACAU-GCCCuucUGCCAgagcaggGUCUCUuUCa -3'
miRNA:   3'- uCCUGUAuCGGG---ACGGU-------UAGAGAuGG- -5'
9468 3' -52.2 NC_002531.1 + 122371 0.68 0.915801
Target:  5'- gAGGGCGUgaaGGCCCUcuggcacgGUCAuUCUC-ACCa -3'
miRNA:   3'- -UCCUGUA---UCGGGA--------CGGUuAGAGaUGG- -5'
9468 3' -52.2 NC_002531.1 + 81443 0.68 0.915801
Target:  5'- uGGACAcuauuCCCUGgCAagaggcugguAUCUCUGCCg -3'
miRNA:   3'- uCCUGUauc--GGGACgGU----------UAGAGAUGG- -5'
9468 3' -52.2 NC_002531.1 + 90610 0.69 0.896495
Target:  5'- uGGAaggcugugcCAUcGCCuCUGCCAAUCUCUGu- -3'
miRNA:   3'- uCCU---------GUAuCGG-GACGGUUAGAGAUgg -5'
9468 3' -52.2 NC_002531.1 + 65762 0.69 0.896495
Target:  5'- uGGACG-GGCUgaGCCAGUCUg-GCCg -3'
miRNA:   3'- uCCUGUaUCGGgaCGGUUAGAgaUGG- -5'
9468 3' -52.2 NC_002531.1 + 99553 0.69 0.889554
Target:  5'- cGGGACu--GUUCUGCCAAg-UCUACUa -3'
miRNA:   3'- -UCCUGuauCGGGACGGUUagAGAUGG- -5'
9468 3' -52.2 NC_002531.1 + 122586 0.69 0.882366
Target:  5'- gAGGccuCGUGGCCUgcgugGCgGAgCUCUGCCu -3'
miRNA:   3'- -UCCu--GUAUCGGGa----CGgUUaGAGAUGG- -5'
9468 3' -52.2 NC_002531.1 + 119049 0.7 0.851251
Target:  5'- aAGGAgAUAGCCCagauggGCCAGgugCUCaagaggGCCc -3'
miRNA:   3'- -UCCUgUAUCGGGa-----CGGUUa--GAGa-----UGG- -5'
9468 3' -52.2 NC_002531.1 + 119592 0.7 0.851251
Target:  5'- aAGGAgAUAGCCCagauggGCCAGgugCUCaagaggGCCc -3'
miRNA:   3'- -UCCUgUAUCGGGa-----CGGUUa--GAGa-----UGG- -5'
9468 3' -52.2 NC_002531.1 + 89813 0.71 0.825624
Target:  5'- gGGGACGUGGCCCUGUU--UCcagaACCa -3'
miRNA:   3'- -UCCUGUAUCGGGACGGuuAGaga-UGG- -5'
9468 3' -52.2 NC_002531.1 + 88341 0.71 0.788816
Target:  5'- uAGG-CuUAGCCCUGCCcugCUC-ACCa -3'
miRNA:   3'- -UCCuGuAUCGGGACGGuuaGAGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.