miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9469 3' -59.4 NC_002531.1 + 10040 0.66 0.758967
Target:  5'- --gGgCCgCugGUGCaaUCGGGGCCggCCa -3'
miRNA:   3'- ucaUgGGgGugCACG--AGCCCUGGa-GG- -5'
9469 3' -59.4 NC_002531.1 + 119275 0.66 0.74008
Target:  5'- uGgcCCCCCugGUccCUCGGGccCCUCUu -3'
miRNA:   3'- uCauGGGGGugCAc-GAGCCCu-GGAGG- -5'
9469 3' -59.4 NC_002531.1 + 119089 0.66 0.74008
Target:  5'- uGgcCCCCCugGUccCUCGGGccCCUCUu -3'
miRNA:   3'- uCauGGGGGugCAc-GAGCCCu-GGAGG- -5'
9469 3' -59.4 NC_002531.1 + 93467 0.66 0.730497
Target:  5'- ----aCCCCugGUGCagUUGagagaggcGGACCUCCa -3'
miRNA:   3'- ucaugGGGGugCACG--AGC--------CCUGGAGG- -5'
9469 3' -59.4 NC_002531.1 + 46679 0.68 0.645605
Target:  5'- aAGUuuuCCCCCcucaccacguaggauGCGUagGCcgCGGGACCUaCCa -3'
miRNA:   3'- -UCAu--GGGGG---------------UGCA--CGa-GCCCUGGA-GG- -5'
9469 3' -59.4 NC_002531.1 + 118505 0.68 0.621559
Target:  5'- aGGU-CCUUCugGUccCUCGGGGCCUUCu -3'
miRNA:   3'- -UCAuGGGGGugCAc-GAGCCCUGGAGG- -5'
9469 3' -59.4 NC_002531.1 + 118762 0.68 0.621559
Target:  5'- cGGU-CCUUCugGUccCUCGGGGCCUUCu -3'
miRNA:   3'- -UCAuGGGGGugCAc-GAGCCCUGGAGG- -5'
9469 3' -59.4 NC_002531.1 + 118697 0.68 0.621559
Target:  5'- aGGU-CCUUCugGUccCUCGGGGCCUUCu -3'
miRNA:   3'- -UCAuGGGGGugCAc-GAGCCCUGGAGG- -5'
9469 3' -59.4 NC_002531.1 + 119463 0.69 0.591575
Target:  5'- cAGgcCCUUCugGUccCUCGGGGCCUUCg -3'
miRNA:   3'- -UCauGGGGGugCAc-GAGCCCUGGAGG- -5'
9469 3' -59.4 NC_002531.1 + 90518 0.7 0.513302
Target:  5'- uGUcUCCCUAUGUGCUUGGuGACUguuUCCa -3'
miRNA:   3'- uCAuGGGGGUGCACGAGCC-CUGG---AGG- -5'
9469 3' -59.4 NC_002531.1 + 101450 0.71 0.457481
Target:  5'- aGGUACCCaUugG-GCUCaGGGACC-CCg -3'
miRNA:   3'- -UCAUGGGgGugCaCGAG-CCCUGGaGG- -5'
9469 3' -59.4 NC_002531.1 + 119148 0.73 0.380333
Target:  5'- cAGgcCCCUCugGUccCUCGGGGCCUUCu -3'
miRNA:   3'- -UCauGGGGGugCAc-GAGCCCUGGAGG- -5'
9469 3' -59.4 NC_002531.1 + 82345 0.73 0.34895
Target:  5'- -cUACCCuCCGgGaGCUCGGGGCCguggCCa -3'
miRNA:   3'- ucAUGGG-GGUgCaCGAGCCCUGGa---GG- -5'
9469 3' -59.4 NC_002531.1 + 13866 1.12 0.000838
Target:  5'- gAGUACCCCCACGUGCUCGGGACCUCCa -3'
miRNA:   3'- -UCAUGGGGGUGCACGAGCCCUGGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.