miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9473 5' -49.1 NC_002531.1 + 64394 0.66 0.997572
Target:  5'- gUCACAGAgACaAACACucaaGAGUUACUa -3'
miRNA:   3'- -GGUGUCUgUG-UUGUGug--UUCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 77617 0.66 0.996454
Target:  5'- cCCgACAGACACucaagauauuaguAACuGCACAgaaguuucagaagAGCUGCCa -3'
miRNA:   3'- -GG-UGUCUGUG-------------UUG-UGUGU-------------UCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 58257 0.66 0.995954
Target:  5'- aCCAUGGAgGuCAACAgACuAGcCUACCUg -3'
miRNA:   3'- -GGUGUCUgU-GUUGUgUGuUC-GAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 9246 0.67 0.99525
Target:  5'- uUCACAGucuuuCAUcaaAACACACA-GCUACUg -3'
miRNA:   3'- -GGUGUCu----GUG---UUGUGUGUuCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 40564 0.67 0.99525
Target:  5'- -gGCGGACGgggcuuaccaguUAGCugGCAuGGCUACCa -3'
miRNA:   3'- ggUGUCUGU------------GUUGugUGU-UCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 77256 0.67 0.99502
Target:  5'- cCCACGGcuACGC-GCACuACGucuacuccacucugAGCUACCUg -3'
miRNA:   3'- -GGUGUC--UGUGuUGUG-UGU--------------UCGAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 70142 0.67 0.994449
Target:  5'- gCACAG-CugAGCACAgcAGCUGCa- -3'
miRNA:   3'- gGUGUCuGugUUGUGUguUCGAUGga -5'
9473 5' -49.1 NC_002531.1 + 83706 0.67 0.993542
Target:  5'- aCC-CAGAgGCAACAgAUAAGUUcCCa -3'
miRNA:   3'- -GGuGUCUgUGUUGUgUGUUCGAuGGa -5'
9473 5' -49.1 NC_002531.1 + 75435 0.67 0.993542
Target:  5'- uUugAGAC-CAGCuuuACAgGAGCUACCc -3'
miRNA:   3'- gGugUCUGuGUUG---UGUgUUCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 103 0.67 0.993542
Target:  5'- cUCACAGACACAcaGCAagaaAgAAGC-GCCg -3'
miRNA:   3'- -GGUGUCUGUGU--UGUg---UgUUCGaUGGa -5'
9473 5' -49.1 NC_002531.1 + 56051 0.67 0.993542
Target:  5'- gCCAgGGGgACuGCAgACAGGCcACCUc -3'
miRNA:   3'- -GGUgUCUgUGuUGUgUGUUCGaUGGA- -5'
9473 5' -49.1 NC_002531.1 + 15280 0.67 0.991375
Target:  5'- cCCAaccaAGGCGaGACACuuaACGAGCUGCUg -3'
miRNA:   3'- -GGUg---UCUGUgUUGUG---UGUUCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 96684 0.68 0.990094
Target:  5'- aUACAGACucccugcuCAGCACACAcgAGUcACCa -3'
miRNA:   3'- gGUGUCUGu-------GUUGUGUGU--UCGaUGGa -5'
9473 5' -49.1 NC_002531.1 + 52883 0.68 0.985346
Target:  5'- cCUGCAGACucuCGucACACACAGGg-GCCUa -3'
miRNA:   3'- -GGUGUCUGu--GU--UGUGUGUUCgaUGGA- -5'
9473 5' -49.1 NC_002531.1 + 82949 0.68 0.983429
Target:  5'- cUCACAGACuguGCAACuuCugGAGCUAUa- -3'
miRNA:   3'- -GGUGUCUG---UGUUGu-GugUUCGAUGga -5'
9473 5' -49.1 NC_002531.1 + 112225 0.69 0.981327
Target:  5'- gCCGCuGcACACAaaagGCACAUAAGgCUGCUa -3'
miRNA:   3'- -GGUGuC-UGUGU----UGUGUGUUC-GAUGGa -5'
9473 5' -49.1 NC_002531.1 + 37733 0.69 0.981327
Target:  5'- aCUGCAGGCccUggUAUAgGAGCUGCCUa -3'
miRNA:   3'- -GGUGUCUGu-GuuGUGUgUUCGAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 58108 0.69 0.979032
Target:  5'- cCCACGGACACcgcCACGCGccGCUggacgGCCa -3'
miRNA:   3'- -GGUGUCUGUGuu-GUGUGUu-CGA-----UGGa -5'
9473 5' -49.1 NC_002531.1 + 27323 0.69 0.973824
Target:  5'- -aAUAGACACAGCcCgACAAGCUAUUUu -3'
miRNA:   3'- ggUGUCUGUGUUGuG-UGUUCGAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 25555 0.69 0.973824
Target:  5'- uUguCGGGCAgGACGCGCAGGUagagGCCg -3'
miRNA:   3'- -GguGUCUGUgUUGUGUGUUCGa---UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.