miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9473 5' -49.1 NC_002531.1 + 103 0.67 0.993542
Target:  5'- cUCACAGACACAcaGCAagaaAgAAGC-GCCg -3'
miRNA:   3'- -GGUGUCUGUGU--UGUg---UgUUCGaUGGa -5'
9473 5' -49.1 NC_002531.1 + 6370 0.71 0.943631
Target:  5'- aCACAGACGaugUAGCACGuuaccUAAGCUACUg -3'
miRNA:   3'- gGUGUCUGU---GUUGUGU-----GUUCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 9246 0.67 0.99525
Target:  5'- uUCACAGucuuuCAUcaaAACACACA-GCUACUg -3'
miRNA:   3'- -GGUGUCu----GUG---UUGUGUGUuCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 9557 0.73 0.866963
Target:  5'- gUACAGACACAACagGCGCGAagauGCUgcACCUg -3'
miRNA:   3'- gGUGUCUGUGUUG--UGUGUU----CGA--UGGA- -5'
9473 5' -49.1 NC_002531.1 + 13504 0.71 0.943631
Target:  5'- aCCGCAGGgACAACuACAUAcuGGCUggGCCc -3'
miRNA:   3'- -GGUGUCUgUGUUG-UGUGU--UCGA--UGGa -5'
9473 5' -49.1 NC_002531.1 + 15280 0.67 0.991375
Target:  5'- cCCAaccaAGGCGaGACACuuaACGAGCUGCUg -3'
miRNA:   3'- -GGUg---UCUGUgUUGUG---UGUUCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 25555 0.69 0.973824
Target:  5'- uUguCGGGCAgGACGCGCAGGUagagGCCg -3'
miRNA:   3'- -GguGUCUGUgUUGUGUGUUCGa---UGGa -5'
9473 5' -49.1 NC_002531.1 + 27204 1.1 0.009821
Target:  5'- uCCACAGACACAACACACAAGCUACCUu -3'
miRNA:   3'- -GGUGUCUGUGUUGUGUGUUCGAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 27323 0.69 0.973824
Target:  5'- -aAUAGACACAGCcCgACAAGCUAUUUu -3'
miRNA:   3'- ggUGUCUGUGUUGuG-UGUUCGAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 37733 0.69 0.981327
Target:  5'- aCUGCAGGCccUggUAUAgGAGCUGCCUa -3'
miRNA:   3'- -GGUGUCUGu-GuuGUGUgUUCGAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 40564 0.67 0.99525
Target:  5'- -gGCGGACGgggcuuaccaguUAGCugGCAuGGCUACCa -3'
miRNA:   3'- ggUGUCUGU------------GUUGugUGU-UCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 49341 0.71 0.928052
Target:  5'- aUCACuGGACACcACACACgAAGCccUACCUc -3'
miRNA:   3'- -GGUG-UCUGUGuUGUGUG-UUCG--AUGGA- -5'
9473 5' -49.1 NC_002531.1 + 52883 0.68 0.985346
Target:  5'- cCUGCAGACucuCGucACACACAGGg-GCCUa -3'
miRNA:   3'- -GGUGUCUGu--GU--UGUGUGUUCgaUGGA- -5'
9473 5' -49.1 NC_002531.1 + 56051 0.67 0.993542
Target:  5'- gCCAgGGGgACuGCAgACAGGCcACCUc -3'
miRNA:   3'- -GGUgUCUgUGuUGUgUGUUCGaUGGA- -5'
9473 5' -49.1 NC_002531.1 + 56449 0.75 0.777089
Target:  5'- aCAUAGACACAAUggAC-CAGGCUACUUu -3'
miRNA:   3'- gGUGUCUGUGUUG--UGuGUUCGAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 58108 0.69 0.979032
Target:  5'- cCCACGGACACcgcCACGCGccGCUggacgGCCa -3'
miRNA:   3'- -GGUGUCUGUGuu-GUGUGUu-CGA-----UGGa -5'
9473 5' -49.1 NC_002531.1 + 58257 0.66 0.995954
Target:  5'- aCCAUGGAgGuCAACAgACuAGcCUACCUg -3'
miRNA:   3'- -GGUGUCUgU-GUUGUgUGuUC-GAUGGA- -5'
9473 5' -49.1 NC_002531.1 + 60975 0.72 0.896715
Target:  5'- uCCACAGACGCGucCACA-AAGCU-CCUu -3'
miRNA:   3'- -GGUGUCUGUGUu-GUGUgUUCGAuGGA- -5'
9473 5' -49.1 NC_002531.1 + 61830 0.74 0.824483
Target:  5'- gCCAguGuAgGCAAUACACAaaAGCUGCCa -3'
miRNA:   3'- -GGUguC-UgUGUUGUGUGU--UCGAUGGa -5'
9473 5' -49.1 NC_002531.1 + 64394 0.66 0.997572
Target:  5'- gUCACAGAgACaAACACucaaGAGUUACUa -3'
miRNA:   3'- -GGUGUCUgUG-UUGUGug--UUCGAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.