Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9476 | 5' | -46.9 | NC_002531.1 | + | 74397 | 0.66 | 0.999635 |
Target: 5'- uUACuCAGAUgCUAAUggCCAGUCUGUUg -3' miRNA: 3'- -GUGuGUCUAgGAUUG--GGUUAGAUAGa -5' |
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9476 | 5' | -46.9 | NC_002531.1 | + | 110918 | 0.66 | 0.999635 |
Target: 5'- cCACGCAGAUCCUAGgCacAUgaGUCa -3' miRNA: 3'- -GUGUGUCUAGGAUUgGguUAgaUAGa -5' |
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9476 | 5' | -46.9 | NC_002531.1 | + | 2080 | 0.66 | 0.999538 |
Target: 5'- aCACGCGGcUCCgggGGCCCAGUgUUGUa- -3' miRNA: 3'- -GUGUGUCuAGGa--UUGGGUUA-GAUAga -5' |
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9476 | 5' | -46.9 | NC_002531.1 | + | 22980 | 0.67 | 0.999259 |
Target: 5'- cCAUACAGAauugaauaCCUGACCCAGUauaagcaCUGUUUg -3' miRNA: 3'- -GUGUGUCUa-------GGAUUGGGUUA-------GAUAGA- -5' |
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9476 | 5' | -46.9 | NC_002531.1 | + | 107877 | 0.74 | 0.912726 |
Target: 5'- uGCACAGAUCCU--UCCAGUCUugugagAUCUu -3' miRNA: 3'- gUGUGUCUAGGAuuGGGUUAGA------UAGA- -5' |
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9476 | 5' | -46.9 | NC_002531.1 | + | 77095 | 0.79 | 0.693263 |
Target: 5'- aCACGCAGGUCCcGAUCCAcgGUCUAUUUu -3' miRNA: 3'- -GUGUGUCUAGGaUUGGGU--UAGAUAGA- -5' |
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9476 | 5' | -46.9 | NC_002531.1 | + | 28214 | 0.81 | 0.593685 |
Target: 5'- aACGgAGAUCCUuGCUCAAUCUGUCUu -3' miRNA: 3'- gUGUgUCUAGGAuUGGGUUAGAUAGA- -5' |
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9476 | 5' | -46.9 | NC_002531.1 | + | 28090 | 1.09 | 0.018725 |
Target: 5'- aCACACAGAUCCUAACCCAAUCUAUCUu -3' miRNA: 3'- -GUGUGUCUAGGAUUGGGUUAGAUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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