Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9477 | 5' | -47.9 | NC_002531.1 | + | 28211 | 1.12 | 0.008029 |
Target: 5'- aCACUACAGAGAGCACCUUAAGCUAUCa -3' miRNA: 3'- -GUGAUGUCUCUCGUGGAAUUCGAUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 61296 | 0.75 | 0.800697 |
Target: 5'- uGCUGgGGAGGGCGgUaUAAGCUAUCu -3' miRNA: 3'- gUGAUgUCUCUCGUgGaAUUCGAUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 12352 | 0.75 | 0.810338 |
Target: 5'- cCACU-UAGAGAGCGCCUccAGGCgGUCa -3' miRNA: 3'- -GUGAuGUCUCUCGUGGAa-UUCGaUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 46289 | 0.74 | 0.846884 |
Target: 5'- aGCUugACGGAGAGCACCgu--GuCUAUCa -3' miRNA: 3'- gUGA--UGUCUCUCGUGGaauuC-GAUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 74620 | 0.74 | 0.855467 |
Target: 5'- cCACUGCAGAGcgguGCugCUgcGGCUgGUCg -3' miRNA: 3'- -GUGAUGUCUCu---CGugGAauUCGA-UAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 126709 | 0.7 | 0.964415 |
Target: 5'- uGCUGCAGAGGGUAUgUgauuAGUUAUUa -3' miRNA: 3'- gUGAUGUCUCUCGUGgAau--UCGAUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 101624 | 0.7 | 0.967883 |
Target: 5'- gGCUugAGGGAGCGCCau-AGUUGc- -3' miRNA: 3'- gUGAugUCUCUCGUGGaauUCGAUag -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 23240 | 0.7 | 0.97351 |
Target: 5'- cCACcACGGAGAGUACCUUGAauuuucaaauauCUAUCc -3' miRNA: 3'- -GUGaUGUCUCUCGUGGAAUUc-----------GAUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 68799 | 0.7 | 0.974088 |
Target: 5'- aACUGCcccuacAGAGCACCUUAAGUaaggAUCu -3' miRNA: 3'- gUGAUGuc----UCUCGUGGAAUUCGa---UAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 48854 | 0.69 | 0.979371 |
Target: 5'- cUACUAUAGAGAcGgGCC-UGAGCUAc- -3' miRNA: 3'- -GUGAUGUCUCU-CgUGGaAUUCGAUag -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 44103 | 0.69 | 0.98381 |
Target: 5'- uCACUgGCAGAaAGCACUUUAGGgUGUUc -3' miRNA: 3'- -GUGA-UGUCUcUCGUGGAAUUCgAUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 225 | 0.69 | 0.985738 |
Target: 5'- gCACgGCAGAGAGC-CCUUuuacccuCUGUCa -3' miRNA: 3'- -GUGaUGUCUCUCGuGGAAuuc----GAUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 13234 | 0.68 | 0.989061 |
Target: 5'- gGCUGCAGGGGGCuuGCCagUAAGUg--- -3' miRNA: 3'- gUGAUGUCUCUCG--UGGa-AUUCGauag -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 88365 | 0.68 | 0.99288 |
Target: 5'- aGCUAUGGAGAccuGCGCCUcuuuUAGGCUu-- -3' miRNA: 3'- gUGAUGUCUCU---CGUGGA----AUUCGAuag -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 28334 | 0.67 | 0.995551 |
Target: 5'- ---aACuGAGAuuGUAUCUUAAGCUAUCc -3' miRNA: 3'- gugaUGuCUCU--CGUGGAAUUCGAUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 58612 | 0.67 | 0.995551 |
Target: 5'- cCACUGCGGGGuggcAGCACg-UGAGCaUAUUa -3' miRNA: 3'- -GUGAUGUCUC----UCGUGgaAUUCG-AUAG- -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 122126 | 0.67 | 0.996233 |
Target: 5'- uCGCUGCAGAGGGCcgagagcaaGCCgucUGAGUa--- -3' miRNA: 3'- -GUGAUGUCUCUCG---------UGGa--AUUCGauag -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 76063 | 0.66 | 0.998164 |
Target: 5'- -uUUACAgGAGAGUACCUUGcGGCUu-- -3' miRNA: 3'- guGAUGU-CUCUCGUGGAAU-UCGAuag -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 56993 | 0.66 | 0.998487 |
Target: 5'- aGCUugGCuGAGAGCACCccgGGGCa--- -3' miRNA: 3'- gUGA--UGuCUCUCGUGGaa-UUCGauag -5' |
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9477 | 5' | -47.9 | NC_002531.1 | + | 15891 | 0.66 | 0.998487 |
Target: 5'- ---aACAGAGAGUGCCUUAAagacCUGUg -3' miRNA: 3'- gugaUGUCUCUCGUGGAAUUc---GAUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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