miRNA: 3'- -GUGAUGUCUCu---CGugGAauUCGA-UAG- -5'
miRNA: 3'- gUGA--UGUCUCUCGUGGaauuC-GAUAG- -5'
miRNA: 3'- -GUGAuGUCUCUCGUGGAa-UUCGaUAG- -5'
miRNA: 3'- gUGAUgUCUCUCGUgGaAUUCGAUAG- -5'
miRNA: 3'- -GUGAUGUCUCUCGUGGAAUUCGAUAG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9477 | 5' | -47.9 | NC_002531.1 | + | 74620 | 0.74 | 0.855467 |
|
Target: 5'- cCACUGCAGAGcgguGCugCUgcGGCUgGUCg -3' miRNA: 3'- -GUGAUGUCUCu---CGugGAauUCGA-UAG- -5' |
|||||||
| 9477 | 5' | -47.9 | NC_002531.1 | + | 46289 | 0.74 | 0.846884 |
|
Target: 5'- aGCUugACGGAGAGCACCgu--GuCUAUCa -3' miRNA: 3'- gUGA--UGUCUCUCGUGGaauuC-GAUAG- -5' |
|||||||
| 9477 | 5' | -47.9 | NC_002531.1 | + | 12352 | 0.75 | 0.810338 |
|
Target: 5'- cCACU-UAGAGAGCGCCUccAGGCgGUCa -3' miRNA: 3'- -GUGAuGUCUCUCGUGGAa-UUCGaUAG- -5' |
|||||||
| 9477 | 5' | -47.9 | NC_002531.1 | + | 61296 | 0.75 | 0.800697 |
|
Target: 5'- uGCUGgGGAGGGCGgUaUAAGCUAUCu -3' miRNA: 3'- gUGAUgUCUCUCGUgGaAUUCGAUAG- -5' |
|||||||
| 9477 | 5' | -47.9 | NC_002531.1 | + | 28211 | 1.12 | 0.008029 |
|
Target: 5'- aCACUACAGAGAGCACCUUAAGCUAUCa -3' miRNA: 3'- -GUGAUGUCUCUCGUGGAAUUCGAUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home