miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
948 3' -51.6 NC_000902.1 + 48352 0.66 0.883702
Target:  5'- gGCUGccGGGugucgcaacuGUGCAGgauauuuuUGCCGGuGGCAGCa -3'
miRNA:   3'- -CGACa-CCC----------UACGUU--------ACGGCU-UCGUUG- -5'
948 3' -51.6 NC_000902.1 + 46304 0.67 0.859277
Target:  5'- cGCUG-GGGuuacGUAAUGCCcuGGCAAUu -3'
miRNA:   3'- -CGACaCCCua--CGUUACGGcuUCGUUG- -5'
948 3' -51.6 NC_000902.1 + 59994 0.67 0.850617
Target:  5'- uGCUGUGGuucUGCuuGUGCCGAcuGCAu- -3'
miRNA:   3'- -CGACACCcu-ACGu-UACGGCUu-CGUug -5'
948 3' -51.6 NC_000902.1 + 49248 0.68 0.783715
Target:  5'- --cGUGGGAggGCGugGCUGAcGCAACg -3'
miRNA:   3'- cgaCACCCUa-CGUuaCGGCUuCGUUG- -5'
948 3' -51.6 NC_000902.1 + 9280 1.12 0.0015
Target:  5'- aGCUGUGGGAUGCAAUGCCGAAGCAACc -3'
miRNA:   3'- -CGACACCCUACGUUACGGCUUCGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.