miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9480 3' -48.7 NC_002531.1 + 70143 0.66 0.995329
Target:  5'- --uGCACAgCUGAGCAcaGCAgCUGCAa-- -3'
miRNA:   3'- auuCGUGU-GAUUCGU--UGU-GACGUcau -5'
9480 3' -48.7 NC_002531.1 + 39727 0.66 0.994508
Target:  5'- cAAGCACAgUAAGCuGCAUUGaAGg- -3'
miRNA:   3'- aUUCGUGUgAUUCGuUGUGACgUCau -5'
9480 3' -48.7 NC_002531.1 + 29465 0.66 0.992515
Target:  5'- cAAGUACACUAcGUAuCAC-GCGGUGa -3'
miRNA:   3'- aUUCGUGUGAUuCGUuGUGaCGUCAU- -5'
9480 3' -48.7 NC_002531.1 + 9417 0.66 0.991324
Target:  5'- -cGGCACACUcAGUAGCugUGUg--- -3'
miRNA:   3'- auUCGUGUGAuUCGUUGugACGucau -5'
9480 3' -48.7 NC_002531.1 + 51994 0.67 0.989409
Target:  5'- gGGGCGCACUcgucaauaaaguuGGCAAuugcCACUGCGGa- -3'
miRNA:   3'- aUUCGUGUGAu------------UCGUU----GUGACGUCau -5'
9480 3' -48.7 NC_002531.1 + 90978 0.67 0.986833
Target:  5'- gGAGCAUggucaGCUccuGCAGCAgaGCGGUAg -3'
miRNA:   3'- aUUCGUG-----UGAuu-CGUUGUgaCGUCAU- -5'
9480 3' -48.7 NC_002531.1 + 126724 0.67 0.984995
Target:  5'- aAGGCugGCUGu-CGAUGCUGCAGa- -3'
miRNA:   3'- aUUCGugUGAUucGUUGUGACGUCau -5'
9480 3' -48.7 NC_002531.1 + 125895 0.67 0.982967
Target:  5'- cAAGUAUuaACUuuGCGugGCUGCAGg- -3'
miRNA:   3'- aUUCGUG--UGAuuCGUugUGACGUCau -5'
9480 3' -48.7 NC_002531.1 + 74315 0.68 0.978299
Target:  5'- -cGGC-CACUGGGCAGCagcaGCUGCAu-- -3'
miRNA:   3'- auUCGuGUGAUUCGUUG----UGACGUcau -5'
9480 3' -48.7 NC_002531.1 + 62620 0.68 0.972748
Target:  5'- aAAGCugAUUGAGC-ACACUGCc--- -3'
miRNA:   3'- aUUCGugUGAUUCGuUGUGACGucau -5'
9480 3' -48.7 NC_002531.1 + 6547 0.69 0.966238
Target:  5'- cAGGUAUGCUucucaAAGCAGCaauaGCUGCAGUc -3'
miRNA:   3'- aUUCGUGUGA-----UUCGUUG----UGACGUCAu -5'
9480 3' -48.7 NC_002531.1 + 1841 0.7 0.949624
Target:  5'- aAAGCACuaguaaaACUAGGCAACACUucaCAGUu -3'
miRNA:   3'- aUUCGUG-------UGAUUCGUUGUGAc--GUCAu -5'
9480 3' -48.7 NC_002531.1 + 57939 0.7 0.945357
Target:  5'- uUGAGCugGCcguccAGCGGCGCgugGCGGUGu -3'
miRNA:   3'- -AUUCGugUGau---UCGUUGUGa--CGUCAU- -5'
9480 3' -48.7 NC_002531.1 + 37973 0.7 0.929458
Target:  5'- cUGGGUGCGCUGGGCugcccGCACUGaAGUAa -3'
miRNA:   3'- -AUUCGUGUGAUUCGu----UGUGACgUCAU- -5'
9480 3' -48.7 NC_002531.1 + 29273 1.05 0.013933
Target:  5'- cUAAGCACACUAAGCAACACUGCAGUAu -3'
miRNA:   3'- -AUUCGUGUGAUUCGUUGUGACGUCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.