miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9486 5' -49 NC_002531.1 + 36140 0.66 0.996492
Target:  5'- aUCAGGuCCgAGCAGAUA--GCCuCUAGGa -3'
miRNA:   3'- -AGUUU-GGaUCGUCUGUuaCGG-GAUCU- -5'
9486 5' -49 NC_002531.1 + 108525 0.66 0.996492
Target:  5'- gCAuuCCUGGCAGugGAacCCCaGGAc -3'
miRNA:   3'- aGUuuGGAUCGUCugUUacGGGaUCU- -5'
9486 5' -49 NC_002531.1 + 125981 0.66 0.996492
Target:  5'- cUCAAACaaaUAGUcaAGugccACAucGUGCCCUGGAc -3'
miRNA:   3'- -AGUUUGg--AUCG--UC----UGU--UACGGGAUCU- -5'
9486 5' -49 NC_002531.1 + 108314 0.66 0.995857
Target:  5'- uUCAGACgUGGCaccAGGcCGAUGCCUUAc- -3'
miRNA:   3'- -AGUUUGgAUCG---UCU-GUUACGGGAUcu -5'
9486 5' -49 NC_002531.1 + 99204 0.66 0.995432
Target:  5'- gUUGGACUaUAGCGGACAGggacugugagggggGCUCUGGAg -3'
miRNA:   3'- -AGUUUGG-AUCGUCUGUUa-------------CGGGAUCU- -5'
9486 5' -49 NC_002531.1 + 60464 0.66 0.994304
Target:  5'- gUAGGCCUGGUAGAUGggGUCgUAGu -3'
miRNA:   3'- aGUUUGGAUCGUCUGUuaCGGgAUCu -5'
9486 5' -49 NC_002531.1 + 13840 0.67 0.992312
Target:  5'- cCAAAgUUcAGgAGACcuGUGCCCUGGAg -3'
miRNA:   3'- aGUUUgGA-UCgUCUGu-UACGGGAUCU- -5'
9486 5' -49 NC_002531.1 + 124143 0.67 0.991127
Target:  5'- gUCAAACUUgaagacGGCAGACuucagGCCC-GGAa -3'
miRNA:   3'- -AGUUUGGA------UCGUCUGuua--CGGGaUCU- -5'
9486 5' -49 NC_002531.1 + 129012 0.67 0.991127
Target:  5'- gCAAGCCcGG-AGGCuuUGCgCCUAGAa -3'
miRNA:   3'- aGUUUGGaUCgUCUGuuACG-GGAUCU- -5'
9486 5' -49 NC_002531.1 + 47366 0.67 0.989802
Target:  5'- gCAAcuaGCCUgcagcaugcGGUAGACGAUGCCaCUuuGGAg -3'
miRNA:   3'- aGUU---UGGA---------UCGUCUGUUACGG-GA--UCU- -5'
9486 5' -49 NC_002531.1 + 49399 0.67 0.988328
Target:  5'- cCGggUCUGGCAGAgAGUgGUCgUAGAg -3'
miRNA:   3'- aGUuuGGAUCGUCUgUUA-CGGgAUCU- -5'
9486 5' -49 NC_002531.1 + 97315 0.68 0.984888
Target:  5'- aUCAAACUUGGUAGcgaACAAaGCCUggUAGAu -3'
miRNA:   3'- -AGUUUGGAUCGUC---UGUUaCGGG--AUCU- -5'
9486 5' -49 NC_002531.1 + 107628 0.68 0.982902
Target:  5'- -gGGGCUgAGCAGGCAuggGCCCUGu- -3'
miRNA:   3'- agUUUGGaUCGUCUGUua-CGGGAUcu -5'
9486 5' -49 NC_002531.1 + 39943 0.68 0.980726
Target:  5'- -aAAGCgCUAGCAGAUAccGCCCa--- -3'
miRNA:   3'- agUUUG-GAUCGUCUGUuaCGGGaucu -5'
9486 5' -49 NC_002531.1 + 104011 0.69 0.975762
Target:  5'- gCAAACCccggGGCAGGCccucaaAAUGCaCCUGGu -3'
miRNA:   3'- aGUUUGGa---UCGUCUG------UUACG-GGAUCu -5'
9486 5' -49 NC_002531.1 + 87873 0.69 0.969923
Target:  5'- aCAAACuCUGGCAGuuugGAUGCUgUGGAg -3'
miRNA:   3'- aGUUUG-GAUCGUCug--UUACGGgAUCU- -5'
9486 5' -49 NC_002531.1 + 129640 0.69 0.966654
Target:  5'- gCGGGCCU-GCAGGCAAgaccccGCCCaAGGc -3'
miRNA:   3'- aGUUUGGAuCGUCUGUUa-----CGGGaUCU- -5'
9486 5' -49 NC_002531.1 + 122005 0.7 0.959379
Target:  5'- uUCAGagGCCUAGCcauAGGCAAUGgCgUGGGa -3'
miRNA:   3'- -AGUU--UGGAUCG---UCUGUUACgGgAUCU- -5'
9486 5' -49 NC_002531.1 + 24101 0.71 0.941719
Target:  5'- aUCAAACCUguaaauGGCAGcgaGAUGgCCUGGGa -3'
miRNA:   3'- -AGUUUGGA------UCGUCug-UUACgGGAUCU- -5'
9486 5' -49 NC_002531.1 + 123373 0.74 0.809811
Target:  5'- cUCGcGCCUGGCAGGguAUaGUCCUGGGg -3'
miRNA:   3'- -AGUuUGGAUCGUCUguUA-CGGGAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.