miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9487 3' -51.1 NC_002531.1 + 34066 0.66 0.98186
Target:  5'- --cACGUACCUGCGugcgcugcacAGCCggAGGUUa -3'
miRNA:   3'- uauUGCAUGGACGU----------UUGGgaUCCGAg -5'
9487 3' -51.1 NC_002531.1 + 129021 0.66 0.977146
Target:  5'- --uACG-ACCcaGCAAGCCCggAGGCUUu -3'
miRNA:   3'- uauUGCaUGGa-CGUUUGGGa-UCCGAG- -5'
9487 3' -51.1 NC_002531.1 + 24059 0.66 0.977146
Target:  5'- --cGCGU-CCUGCAG--CCUGGcGCUCu -3'
miRNA:   3'- uauUGCAuGGACGUUugGGAUC-CGAG- -5'
9487 3' -51.1 NC_002531.1 + 83906 0.66 0.974477
Target:  5'- -gGGCGUggugaaggaGCCUGuUAAGCUUUAGGCUg -3'
miRNA:   3'- uaUUGCA---------UGGAC-GUUUGGGAUCCGAg -5'
9487 3' -51.1 NC_002531.1 + 46990 0.66 0.971589
Target:  5'- -cAGCGccUGCCUGCAggAGCUCcAGcGCUCa -3'
miRNA:   3'- uaUUGC--AUGGACGU--UUGGGaUC-CGAG- -5'
9487 3' -51.1 NC_002531.1 + 13366 0.67 0.969747
Target:  5'- gGUAAUGUAgCUugagccacucguuggGCuuguAGCCCUGGGCUg -3'
miRNA:   3'- -UAUUGCAUgGA---------------CGu---UUGGGAUCCGAg -5'
9487 3' -51.1 NC_002531.1 + 50423 0.67 0.968472
Target:  5'- cUAACacaucUGCCaUGCGAGCCgcgUUGGGCUCg -3'
miRNA:   3'- uAUUGc----AUGG-ACGUUUGG---GAUCCGAG- -5'
9487 3' -51.1 NC_002531.1 + 69073 0.67 0.961525
Target:  5'- ---gUGUAUCUGUgccccAGACUCUAGGUUCu -3'
miRNA:   3'- uauuGCAUGGACG-----UUUGGGAUCCGAG- -5'
9487 3' -51.1 NC_002531.1 + 103868 0.67 0.961525
Target:  5'- -cAGCGggucAgCUGCAGGCUCU-GGCUCc -3'
miRNA:   3'- uaUUGCa---UgGACGUUUGGGAuCCGAG- -5'
9487 3' -51.1 NC_002531.1 + 50772 0.67 0.957681
Target:  5'- gGUAAg--ACCUGC-AACCUgGGGCUCa -3'
miRNA:   3'- -UAUUgcaUGGACGuUUGGGaUCCGAG- -5'
9487 3' -51.1 NC_002531.1 + 129486 0.68 0.939714
Target:  5'- -gGGCGgggucuUGCCUGCAGGCCCgcauuUAGGUg- -3'
miRNA:   3'- uaUUGC------AUGGACGUUUGGG-----AUCCGag -5'
9487 3' -51.1 NC_002531.1 + 129641 0.68 0.93133
Target:  5'- --uGCGgGCCUGCAggcaaGACCCcgcccaaggccuagGGGCUCg -3'
miRNA:   3'- uauUGCaUGGACGU-----UUGGGa-------------UCCGAG- -5'
9487 3' -51.1 NC_002531.1 + 76586 0.69 0.897918
Target:  5'- uUAAUGaUAgCUGCcuuuGCCCUGGGCUg -3'
miRNA:   3'- uAUUGC-AUgGACGuu--UGGGAUCCGAg -5'
9487 3' -51.1 NC_002531.1 + 9953 0.7 0.876023
Target:  5'- uUGAC-UGCCUGCAucaAACCCUAuGGCc- -3'
miRNA:   3'- uAUUGcAUGGACGU---UUGGGAU-CCGag -5'
9487 3' -51.1 NC_002531.1 + 50580 1.07 0.007415
Target:  5'- aAUAACGUACCUGCAAACCCUAGGCUCc -3'
miRNA:   3'- -UAUUGCAUGGACGUUUGGGAUCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.