miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9487	5'	-56.3	NC_002531.1	+	42552	0.66	0.83552
	Target:  5'- --cAGCCagGGGUgGCAGGcgCUCUGCa -3' miRNA:   3'- gacUCGGggUCCAaCGUCCa-GAGAUG- -5'
9487	5'	-56.3	NC_002531.1	+	36972	0.67	0.809384
	Target:  5'- uUGGGgCCCAGGUUGUcuAGGaguucuUCUCgagagGCg -3' miRNA:   3'- gACUCgGGGUCCAACG--UCC------AGAGa----UG- -5'
9487	5'	-56.3	NC_002531.1	+	80528	0.67	0.803968
	Target:  5'- aUGAGCCCgGGGUgaaaggugacauuccUGUAGGUgUUgGCu -3' miRNA:   3'- gACUCGGGgUCCA---------------ACGUCCAgAGaUG- -5'
9487	5'	-56.3	NC_002531.1	+	122484	0.7	0.640329
	Target:  5'- -aGAGCCCCGGGguggUGguGGagaUCUCc-- -3' miRNA:   3'- gaCUCGGGGUCCa---ACguCC---AGAGaug -5'
9487	5'	-56.3	NC_002531.1	+	129469	0.7	0.629878
	Target:  5'- -cGAGCCCCuAGGUccuuggGCGgGGUCUugcCUGCa -3' miRNA:   3'- gaCUCGGGG-UCCAa-----CGU-CCAGA---GAUG- -5'
9487	5'	-56.3	NC_002531.1	+	24211	0.7	0.608989
	Target:  5'- -aGAGCgCCAGGcUGCAGGaCgcgCUGCc -3' miRNA:   3'- gaCUCGgGGUCCaACGUCCaGa--GAUG- -5'
9487	5'	-56.3	NC_002531.1	+	50616	1.08	0.002146
	Target:  5'- uCUGAGCCCCAGGUUGCAGGUCUCUACc -3' miRNA:   3'- -GACUCGGGGUCCAACGUCCAGAGAUG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home