Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9488 | 3' | -56.2 | NC_002531.1 | + | 82762 | 0.66 | 0.84404 |
Target: 5'- aGCAUCGGCucCCugAGCAUGGUg--- -3' miRNA: 3'- aUGUGGUCGu-GGugUCGUGCCAgagg -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 10184 | 0.66 | 0.835743 |
Target: 5'- uUGCACCAGCgGCCcguuaaaagugGCAGCaacuuguugACGGguuucuagaUCUCCa -3' miRNA: 3'- -AUGUGGUCG-UGG-----------UGUCG---------UGCC---------AGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 69785 | 0.67 | 0.827255 |
Target: 5'- cGCACCAGCAgCAcCAGCACuGcaucuacaUCCa -3' miRNA: 3'- aUGUGGUCGUgGU-GUCGUGcCag------AGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 120395 | 0.67 | 0.827255 |
Target: 5'- --aGCCAGUGCCcguACGGCACGuGUUUUUa -3' miRNA: 3'- augUGGUCGUGG---UGUCGUGC-CAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 4149 | 0.67 | 0.818584 |
Target: 5'- -uUAUCAGC-CaGCAGCugGGUUUCUg -3' miRNA: 3'- auGUGGUCGuGgUGUCGugCCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 74080 | 0.67 | 0.809737 |
Target: 5'- cACACCugGGCugagagucuuGCUGCAGCACGGg--CCa -3' miRNA: 3'- aUGUGG--UCG----------UGGUGUCGUGCCagaGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 113447 | 0.77 | 0.275029 |
Target: 5'- cGCACCAGCcacucGCCGCAG-ACGGUCagCCa -3' miRNA: 3'- aUGUGGUCG-----UGGUGUCgUGCCAGa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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