Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9488 | 3' | -56.2 | NC_002531.1 | + | 12075 | 0.68 | 0.753477 |
Target: 5'- cGCugUGGCgGCCG-AGCugGGUCUCa -3' miRNA: 3'- aUGugGUCG-UGGUgUCGugCCAGAGg -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 100951 | 0.67 | 0.813296 |
Target: 5'- gUAC-CCAGgCACUGCAaucguauaccacuguGCACaGUCUCCa -3' miRNA: 3'- -AUGuGGUC-GUGGUGU---------------CGUGcCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 103664 | 0.67 | 0.818584 |
Target: 5'- aGCACCAGCACCAgagcCAGCACc------ -3' miRNA: 3'- aUGUGGUCGUGGU----GUCGUGccagagg -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 90080 | 0.67 | 0.827255 |
Target: 5'- cACAuCCAGC-CgCGCGGCGCGuUCgUCCa -3' miRNA: 3'- aUGU-GGUCGuG-GUGUCGUGCcAG-AGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 23741 | 0.67 | 0.827255 |
Target: 5'- aACugCAGCaaugGCCACAGuCACcG-CUCCu -3' miRNA: 3'- aUGugGUCG----UGGUGUC-GUGcCaGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 74467 | 0.66 | 0.875167 |
Target: 5'- cGCAgCAGCACCGCucuGCAgUGGaccacuuugUUUCCa -3' miRNA: 3'- aUGUgGUCGUGGUGu--CGU-GCC---------AGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 55096 | 1.11 | 0.00162 |
Target: 5'- cUACACCAGCACCACAGCACGGUCUCCa -3' miRNA: 3'- -AUGUGGUCGUGGUGUCGUGCCAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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