miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9488 3' -56.2 NC_002531.1 + 12075 0.68 0.753477
Target:  5'- cGCugUGGCgGCCG-AGCugGGUCUCa -3'
miRNA:   3'- aUGugGUCG-UGGUgUCGugCCAGAGg -5'
9488 3' -56.2 NC_002531.1 + 100951 0.67 0.813296
Target:  5'- gUAC-CCAGgCACUGCAaucguauaccacuguGCACaGUCUCCa -3'
miRNA:   3'- -AUGuGGUC-GUGGUGU---------------CGUGcCAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 103664 0.67 0.818584
Target:  5'- aGCACCAGCACCAgagcCAGCACc------ -3'
miRNA:   3'- aUGUGGUCGUGGU----GUCGUGccagagg -5'
9488 3' -56.2 NC_002531.1 + 90080 0.67 0.827255
Target:  5'- cACAuCCAGC-CgCGCGGCGCGuUCgUCCa -3'
miRNA:   3'- aUGU-GGUCGuG-GUGUCGUGCcAG-AGG- -5'
9488 3' -56.2 NC_002531.1 + 23741 0.67 0.827255
Target:  5'- aACugCAGCaaugGCCACAGuCACcG-CUCCu -3'
miRNA:   3'- aUGugGUCG----UGGUGUC-GUGcCaGAGG- -5'
9488 3' -56.2 NC_002531.1 + 74467 0.66 0.875167
Target:  5'- cGCAgCAGCACCGCucuGCAgUGGaccacuuugUUUCCa -3'
miRNA:   3'- aUGUgGUCGUGGUGu--CGU-GCC---------AGAGG- -5'
9488 3' -56.2 NC_002531.1 + 55096 1.11 0.00162
Target:  5'- cUACACCAGCACCACAGCACGGUCUCCa -3'
miRNA:   3'- -AUGUGGUCGUGGUGUCGUGCCAGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.