miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9488 3' -56.2 NC_002531.1 + 55096 1.11 0.00162
Target:  5'- cUACACCAGCACCACAGCACGGUCUCCa -3'
miRNA:   3'- -AUGUGGUCGUGGUGUCGUGCCAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 113447 0.77 0.275029
Target:  5'- cGCACCAGCcacucGCCGCAG-ACGGUCagCCa -3'
miRNA:   3'- aUGUGGUCG-----UGGUGUCgUGCCAGa-GG- -5'
9488 3' -56.2 NC_002531.1 + 10085 0.72 0.4986
Target:  5'- uUGCAcCCAGCAagGCAGCACacauccucugaGGUCUCUa -3'
miRNA:   3'- -AUGU-GGUCGUggUGUCGUG-----------CCAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 106919 0.7 0.62069
Target:  5'- --aACUGGCuacuguuuagaGCCuCAGCugGGUCUCCu -3'
miRNA:   3'- augUGGUCG-----------UGGuGUCGugCCAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 66469 0.7 0.6519
Target:  5'- aGCACgGGCACCACAcCGCaGGUggCCa -3'
miRNA:   3'- aUGUGgUCGUGGUGUcGUG-CCAgaGG- -5'
9488 3' -56.2 NC_002531.1 + 18320 0.7 0.662282
Target:  5'- cUGCucaCGGCACCAC-GCGCGGgauagCUCUu -3'
miRNA:   3'- -AUGug-GUCGUGGUGuCGUGCCa----GAGG- -5'
9488 3' -56.2 NC_002531.1 + 55288 0.69 0.693242
Target:  5'- aUAC-CCGGCAUgGCAGCAUGG-CgacCCg -3'
miRNA:   3'- -AUGuGGUCGUGgUGUCGUGCCaGa--GG- -5'
9488 3' -56.2 NC_002531.1 + 14577 0.69 0.723726
Target:  5'- -cCACCAGCucaCGCAGCugGucuagcuUCUCCa -3'
miRNA:   3'- auGUGGUCGug-GUGUCGugCc------AGAGG- -5'
9488 3' -56.2 NC_002531.1 + 12075 0.68 0.753477
Target:  5'- cGCugUGGCgGCCG-AGCugGGUCUCa -3'
miRNA:   3'- aUGugGUCG-UGGUgUCGugCCAGAGg -5'
9488 3' -56.2 NC_002531.1 + 35677 0.68 0.772775
Target:  5'- aGCAUCuguGaCGCCACAGUuggccACGGcCUCCc -3'
miRNA:   3'- aUGUGGu--C-GUGGUGUCG-----UGCCaGAGG- -5'
9488 3' -56.2 NC_002531.1 + 14027 0.68 0.772775
Target:  5'- cACACUggaggucccgAGCAcguggggguacuCCAgGGCACaGGUCUCCu -3'
miRNA:   3'- aUGUGG----------UCGU------------GGUgUCGUG-CCAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 84890 0.67 0.782234
Target:  5'- uUAC-CCAGCACCAC-GUugGGguagagCCg -3'
miRNA:   3'- -AUGuGGUCGUGGUGuCGugCCaga---GG- -5'
9488 3' -56.2 NC_002531.1 + 42923 0.67 0.782234
Target:  5'- aUGC-CCAGUuauucuaugcuGCCGguGCGgGGUUUCCa -3'
miRNA:   3'- -AUGuGGUCG-----------UGGUguCGUgCCAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 87987 0.67 0.799814
Target:  5'- aUACAacaaCAGCaucacugaaacucGCCAuacCAGCACGGUCgauagCCa -3'
miRNA:   3'- -AUGUg---GUCG-------------UGGU---GUCGUGCCAGa----GG- -5'
9488 3' -56.2 NC_002531.1 + 74080 0.67 0.809737
Target:  5'- cACACCugGGCugagagucuuGCUGCAGCACGGg--CCa -3'
miRNA:   3'- aUGUGG--UCG----------UGGUGUCGUGCCagaGG- -5'
9488 3' -56.2 NC_002531.1 + 100951 0.67 0.813296
Target:  5'- gUAC-CCAGgCACUGCAaucguauaccacuguGCACaGUCUCCa -3'
miRNA:   3'- -AUGuGGUC-GUGGUGU---------------CGUGcCAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 4149 0.67 0.818584
Target:  5'- -uUAUCAGC-CaGCAGCugGGUUUCUg -3'
miRNA:   3'- auGUGGUCGuGgUGUCGugCCAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 103664 0.67 0.818584
Target:  5'- aGCACCAGCACCAgagcCAGCACc------ -3'
miRNA:   3'- aUGUGGUCGUGGU----GUCGUGccagagg -5'
9488 3' -56.2 NC_002531.1 + 120395 0.67 0.827255
Target:  5'- --aGCCAGUGCCcguACGGCACGuGUUUUUa -3'
miRNA:   3'- augUGGUCGUGG---UGUCGUGC-CAGAGG- -5'
9488 3' -56.2 NC_002531.1 + 23741 0.67 0.827255
Target:  5'- aACugCAGCaaugGCCACAGuCACcG-CUCCu -3'
miRNA:   3'- aUGugGUCG----UGGUGUC-GUGcCaGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.