Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9488 | 3' | -56.2 | NC_002531.1 | + | 55288 | 0.69 | 0.693242 |
Target: 5'- aUAC-CCGGCAUgGCAGCAUGG-CgacCCg -3' miRNA: 3'- -AUGuGGUCGUGgUGUCGUGCCaGa--GG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 18320 | 0.7 | 0.662282 |
Target: 5'- cUGCucaCGGCACCAC-GCGCGGgauagCUCUu -3' miRNA: 3'- -AUGug-GUCGUGGUGuCGUGCCa----GAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 66469 | 0.7 | 0.6519 |
Target: 5'- aGCACgGGCACCACAcCGCaGGUggCCa -3' miRNA: 3'- aUGUGgUCGUGGUGUcGUG-CCAgaGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 106919 | 0.7 | 0.62069 |
Target: 5'- --aACUGGCuacuguuuagaGCCuCAGCugGGUCUCCu -3' miRNA: 3'- augUGGUCG-----------UGGuGUCGugCCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 10085 | 0.72 | 0.4986 |
Target: 5'- uUGCAcCCAGCAagGCAGCACacauccucugaGGUCUCUa -3' miRNA: 3'- -AUGU-GGUCGUggUGUCGUG-----------CCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 113447 | 0.77 | 0.275029 |
Target: 5'- cGCACCAGCcacucGCCGCAG-ACGGUCagCCa -3' miRNA: 3'- aUGUGGUCG-----UGGUGUCgUGCCAGa-GG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 55096 | 1.11 | 0.00162 |
Target: 5'- cUACACCAGCACCACAGCACGGUCUCCa -3' miRNA: 3'- -AUGUGGUCGUGGUGUCGUGCCAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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