miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
949 3' -48.3 NC_000902.1 + 21540 0.66 0.983751
Target:  5'- -aAAACGcAGAAcuGCUcuGGAUGCAUCUCu -3'
miRNA:   3'- ugUUUGCuUCUU--CGG--CUUGCGUAGAG- -5'
949 3' -48.3 NC_000902.1 + 7616 0.66 0.983751
Target:  5'- ----uUGAGGcucaGAGCUGGACGCGUCa- -3'
miRNA:   3'- uguuuGCUUC----UUCGGCUUGCGUAGag -5'
949 3' -48.3 NC_000902.1 + 7319 0.66 0.979118
Target:  5'- gGCAGG-GAAGcuGGCUGAACGUGUCg- -3'
miRNA:   3'- -UGUUUgCUUCu-UCGGCUUGCGUAGag -5'
949 3' -48.3 NC_000902.1 + 4210 0.66 0.97357
Target:  5'- aACAAAgu--GAAGCCGAGCGCGccgCUg -3'
miRNA:   3'- -UGUUUgcuuCUUCGGCUUGCGUa--GAg -5'
949 3' -48.3 NC_000902.1 + 5747 0.67 0.969767
Target:  5'- aAUAAACGggG-AGCUGuaugcacaaaGCAUCUCc -3'
miRNA:   3'- -UGUUUGCuuCuUCGGCuug-------CGUAGAG- -5'
949 3' -48.3 NC_000902.1 + 53056 0.67 0.967025
Target:  5'- cCGcgUGAGGAuGGCgCGGGCGCAUCg- -3'
miRNA:   3'- uGUuuGCUUCU-UCG-GCUUGCGUAGag -5'
949 3' -48.3 NC_000902.1 + 33139 0.67 0.963355
Target:  5'- uACGGAUGAGcGAAGCCac-CGCGUCa- -3'
miRNA:   3'- -UGUUUGCUU-CUUCGGcuuGCGUAGag -5'
949 3' -48.3 NC_000902.1 + 12601 0.69 0.896482
Target:  5'- uACAagGACGcAGAAGCU--GCGCAUCUg -3'
miRNA:   3'- -UGU--UUGCuUCUUCGGcuUGCGUAGAg -5'
949 3' -48.3 NC_000902.1 + 38006 0.71 0.819034
Target:  5'- gGCGAACGAggAGAAGCCGGAC-CAc--- -3'
miRNA:   3'- -UGUUUGCU--UCUUCGGCUUGcGUagag -5'
949 3' -48.3 NC_000902.1 + 47106 0.75 0.632899
Target:  5'- gGCuGGCGAucaGGAGGCUGcAACGCGUCUg -3'
miRNA:   3'- -UGuUUGCU---UCUUCGGC-UUGCGUAGAg -5'
949 3' -48.3 NC_000902.1 + 6833 0.77 0.541329
Target:  5'- gACAAG-GAuGAAGCCGAGCGCAUUg- -3'
miRNA:   3'- -UGUUUgCUuCUUCGGCUUGCGUAGag -5'
949 3' -48.3 NC_000902.1 + 9988 1.1 0.004644
Target:  5'- cACAAACGAAGAAGCCGAACGCAUCUCu -3'
miRNA:   3'- -UGUUUGCUUCUUCGGCUUGCGUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.