miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9491 5' -60.2 NC_002531.1 + 105081 0.66 0.661939
Target:  5'- uUGGcAGUuc-CCCCGcuuuuuacuAGAuUGCCCCCCAg -3'
miRNA:   3'- -ACC-UCGuucGGGGU---------UCU-ACGGGGGGU- -5'
9491 5' -60.2 NC_002531.1 + 79568 0.66 0.641551
Target:  5'- aGGuuuuGgAGGCUCUuuGGGUgGCCCCCCAa -3'
miRNA:   3'- aCCu---CgUUCGGGGu-UCUA-CGGGGGGU- -5'
9491 5' -60.2 NC_002531.1 + 103950 0.66 0.621132
Target:  5'- gUGGaAGUggGCCCCcuGGAgGCagcgcaCCCCAa -3'
miRNA:   3'- -ACC-UCGuuCGGGGu-UCUaCGg-----GGGGU- -5'
9491 5' -60.2 NC_002531.1 + 106053 0.66 0.621132
Target:  5'- aUGuGAGUGAGCCCaGAGAccUGUCUUCCAg -3'
miRNA:   3'- -AC-CUCGUUCGGGgUUCU--ACGGGGGGU- -5'
9491 5' -60.2 NC_002531.1 + 119309 0.67 0.610932
Target:  5'- aGGAGaAGGCCCCGAGGgaccagagggGCCUgaaggagauagCCCAg -3'
miRNA:   3'- aCCUCgUUCGGGGUUCUa---------CGGG-----------GGGU- -5'
9491 5' -60.2 NC_002531.1 + 122501 0.67 0.610932
Target:  5'- cGGGuaccuguuuGCugaGAGCCCCGGGGUGgugguggagaucUCCCCCAa -3'
miRNA:   3'- aCCU---------CG---UUCGGGGUUCUAC------------GGGGGGU- -5'
9491 5' -60.2 NC_002531.1 + 104003 0.67 0.590586
Target:  5'- cGGGGCAGGCCCuCAAaAUGCaCCUg- -3'
miRNA:   3'- aCCUCGUUCGGG-GUUcUACGgGGGgu -5'
9491 5' -60.2 NC_002531.1 + 38609 0.67 0.580455
Target:  5'- cGGGGCcuuuAGCUUCuuAGA-GCCCCCCc -3'
miRNA:   3'- aCCUCGu---UCGGGGu-UCUaCGGGGGGu -5'
9491 5' -60.2 NC_002531.1 + 21438 0.67 0.57036
Target:  5'- cUGGAGC-AGUgCCAGGAUGCCaaaaugaagaCCAu -3'
miRNA:   3'- -ACCUCGuUCGgGGUUCUACGGgg--------GGU- -5'
9491 5' -60.2 NC_002531.1 + 54002 0.68 0.530476
Target:  5'- gUGGAGCu-GCCCCcgcguGAaGaCCCCCUAg -3'
miRNA:   3'- -ACCUCGuuCGGGGuu---CUaC-GGGGGGU- -5'
9491 5' -60.2 NC_002531.1 + 103789 0.68 0.510912
Target:  5'- gGGGGCGcuGCCuCCAGGggGCCCacuuCCAc -3'
miRNA:   3'- aCCUCGUu-CGG-GGUUCuaCGGGg---GGU- -5'
9491 5' -60.2 NC_002531.1 + 10689 0.68 0.501243
Target:  5'- gGGuAGuCAAuCCCCAGGA-GCCCCUCGu -3'
miRNA:   3'- aCC-UC-GUUcGGGGUUCUaCGGGGGGU- -5'
9491 5' -60.2 NC_002531.1 + 21529 0.69 0.482152
Target:  5'- cUGGAGU-GGCCUCuGGcAUGCUCCCCu -3'
miRNA:   3'- -ACCUCGuUCGGGGuUC-UACGGGGGGu -5'
9491 5' -60.2 NC_002531.1 + 34695 0.7 0.418343
Target:  5'- cUGGAGCAccCCCC-----GCCCCCCAg -3'
miRNA:   3'- -ACCUCGUucGGGGuucuaCGGGGGGU- -5'
9491 5' -60.2 NC_002531.1 + 35847 0.7 0.392609
Target:  5'- uUGGGGCAGGCCCgAAGuagaGCCCUg-- -3'
miRNA:   3'- -ACCUCGUUCGGGgUUCua--CGGGGggu -5'
9491 5' -60.2 NC_002531.1 + 9067 0.71 0.359939
Target:  5'- uUGGAGUAaaaguuucagaAGCCCCGauuccacuAGccaugcagcauAUGCCCCCCGa -3'
miRNA:   3'- -ACCUCGU-----------UCGGGGU--------UC-----------UACGGGGGGU- -5'
9491 5' -60.2 NC_002531.1 + 58328 1.08 0.000994
Target:  5'- cUGGAGCAAGCCCCAAGAUGCCCCCCAu -3'
miRNA:   3'- -ACCUCGUUCGGGGUUCUACGGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.