Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9492 | 3' | -56.9 | NC_002531.1 | + | 114167 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115847 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115760 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115789 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115818 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114399 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114428 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114833 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114804 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114775 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114746 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114717 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114631 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114602 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114573 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114544 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114515 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114486 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114457 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 50620 | 0.7 | 0.590711 |
Target: 5'- aGCCCCAggUugCAGGUCUcuaccuacacACCAGAAa -3' miRNA: 3'- cUGGGGUagAugGUCCGGA----------UGGUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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