Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9492 | 3' | -56.9 | NC_002531.1 | + | 115065 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115094 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115123 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115152 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115181 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115210 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115239 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115268 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115297 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115326 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115355 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115384 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115413 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115442 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115471 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115500 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115529 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115558 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115587 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 115616 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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