Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9492 | 3' | -56.9 | NC_002531.1 | + | 60313 | 1.06 | 0.00238 |
Target: 5'- cGACCCCAUCUACCAGGCCUACCAGAAa -3' miRNA: 3'- -CUGGGGUAGAUGGUCCGGAUGGUCUU- -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 80839 | 0.74 | 0.338939 |
Target: 5'- aGGCCCUuggCUGCCAGGCCggagcggcCCAGGAc -3' miRNA: 3'- -CUGGGGua-GAUGGUCCGGau------GGUCUU- -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114659 | 0.71 | 0.518959 |
Target: 5'- uGGCCCCGUCc-CCGGGCUgcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa---UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114254 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114283 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114312 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114370 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114399 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114428 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114457 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114225 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114196 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114573 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114544 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114515 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114602 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114631 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114717 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114746 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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9492 | 3' | -56.9 | NC_002531.1 | + | 114167 | 0.7 | 0.569948 |
Target: 5'- uGGCCCCGUCc-CCGGGCUggcugGCUAGGu -3' miRNA: 3'- -CUGGGGUAGauGGUCCGGa----UGGUCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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