miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9493 5' -50.1 NC_002531.1 + 88185 0.66 0.99066
Target:  5'- -gUUGACUGggGccgugucAGACACggaGACCCUg -3'
miRNA:   3'- aaGACUGACuuU-------UCUGUGg--UUGGGGu -5'
9493 5' -50.1 NC_002531.1 + 68036 0.66 0.989432
Target:  5'- cUCUGAgUGGGAuAGAaagaGCCGcguccACCCCAc -3'
miRNA:   3'- aAGACUgACUUU-UCUg---UGGU-----UGGGGU- -5'
9493 5' -50.1 NC_002531.1 + 73274 0.66 0.989432
Target:  5'- aUUUUG-CUGGAAGGACuuuaaAgCAGCCCCu -3'
miRNA:   3'- -AAGACuGACUUUUCUG-----UgGUUGGGGu -5'
9493 5' -50.1 NC_002531.1 + 31910 0.66 0.987923
Target:  5'- cUUgUGAUUGGAGGGcugauACAUCAACCCUc -3'
miRNA:   3'- -AAgACUGACUUUUC-----UGUGGUUGGGGu -5'
9493 5' -50.1 NC_002531.1 + 83083 0.67 0.984409
Target:  5'- cUUCUGcCUGGGugcccAAGACACCAuguugACCCg- -3'
miRNA:   3'- -AAGACuGACUU-----UUCUGUGGU-----UGGGgu -5'
9493 5' -50.1 NC_002531.1 + 38673 0.67 0.982385
Target:  5'- aUCUuGuCUGGGucG-CACCAACCCCc -3'
miRNA:   3'- aAGA-CuGACUUuuCuGUGGUUGGGGu -5'
9493 5' -50.1 NC_002531.1 + 107627 0.67 0.980169
Target:  5'- ---gGGCUGAGcAGGCAUgGGCCCUg -3'
miRNA:   3'- aagaCUGACUUuUCUGUGgUUGGGGu -5'
9493 5' -50.1 NC_002531.1 + 114326 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114355 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114384 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114413 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114442 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114471 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114297 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114268 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114239 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114210 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114181 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 114152 0.68 0.969201
Target:  5'- -gCUGGCUGGcuAGGugGCCccguCCCCGg -3'
miRNA:   3'- aaGACUGACUu-UUCugUGGuu--GGGGU- -5'
9493 5' -50.1 NC_002531.1 + 115925 0.68 0.969201
Target:  5'- aUCUGGCUGGAGucuaGCAaCAGCUCCAc -3'
miRNA:   3'- aAGACUGACUUUuc--UGUgGUUGGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.