miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9494 3' -53.3 NC_002531.1 + 120243 0.66 0.953122
Target:  5'- --gACUGcGAUGGCggGCCAUccacuagaaccaGAGGCCAu -3'
miRNA:   3'- aggUGACuCUAUCG--CGGUA------------UUCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 118796 0.66 0.944301
Target:  5'- gCCugaacGAGAUAGC-CCAgauGGGCCAg -3'
miRNA:   3'- aGGuga--CUCUAUCGcGGUau-UCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 118605 0.66 0.944301
Target:  5'- gCCugaacGAGAUAGC-CCAgauGGGCCAg -3'
miRNA:   3'- aGGuga--CUCUAUCGcGGUau-UCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 107540 0.66 0.944301
Target:  5'- cCUGCUGuGcgAGUGCCu---GGCCAg -3'
miRNA:   3'- aGGUGACuCuaUCGCGGuauuCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 12577 0.66 0.934461
Target:  5'- gCCAUcgaggcugGAGGcgggGGCGCCGguaAAGGCCGg -3'
miRNA:   3'- aGGUGa-------CUCUa---UCGCGGUa--UUCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 25069 0.68 0.884787
Target:  5'- aUCCA--GAGAUuuagccugGGUGgCGUGAGGCCAg -3'
miRNA:   3'- -AGGUgaCUCUA--------UCGCgGUAUUCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 76945 0.68 0.877448
Target:  5'- cUCgCACUGGGAccaAGaGUCAUAGGGCCc -3'
miRNA:   3'- -AG-GUGACUCUa--UCgCGGUAUUCCGGu -5'
9494 3' -53.3 NC_002531.1 + 119597 0.68 0.877448
Target:  5'- gCCugaagGAGAUAGC-CCAgauGGGCCAg -3'
miRNA:   3'- aGGuga--CUCUAUCGcGGUau-UCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 119282 0.68 0.877448
Target:  5'- gCCugaagGAGAUAGC-CCAgauGGGCCAg -3'
miRNA:   3'- aGGuga--CUCUAUCGcGGUau-UCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 119054 0.68 0.877448
Target:  5'- gCCugaagGAGAUAGC-CCAgauGGGCCAg -3'
miRNA:   3'- aGGuga--CUCUAUCGcGGUau-UCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 118416 0.68 0.877448
Target:  5'- gCCugaagGAGAUAGC-CCAgauGGGCCAg -3'
miRNA:   3'- aGGuga--CUCUAUCGcGGUau-UCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 12354 0.68 0.877448
Target:  5'- uUCCACUuAGAgAGCGCCuccAGGCg- -3'
miRNA:   3'- -AGGUGAcUCUaUCGCGGuauUCCGgu -5'
9494 3' -53.3 NC_002531.1 + 12058 0.68 0.869871
Target:  5'- -aCACUGAugguGAUAGaCGCUGUGGcGGCCGa -3'
miRNA:   3'- agGUGACU----CUAUC-GCGGUAUU-CCGGU- -5'
9494 3' -53.3 NC_002531.1 + 54306 0.69 0.837314
Target:  5'- --aGCUGGGcgAGCGCUccAAGGCCc -3'
miRNA:   3'- aggUGACUCuaUCGCGGuaUUCCGGu -5'
9494 3' -53.3 NC_002531.1 + 17939 0.71 0.752121
Target:  5'- aCCACUGguucaacAGAaacuauUGGCGCCA-AAGGCCu -3'
miRNA:   3'- aGGUGAC-------UCU------AUCGCGGUaUUCCGGu -5'
9494 3' -53.3 NC_002531.1 + 14149 0.71 0.743054
Target:  5'- aCCACUGGGAgGGUGaCUAU-GGGCCu -3'
miRNA:   3'- aGGUGACUCUaUCGC-GGUAuUCCGGu -5'
9494 3' -53.3 NC_002531.1 + 44953 0.72 0.680793
Target:  5'- cCCACUGucuu-GCuGCUAUGAGGCCAu -3'
miRNA:   3'- aGGUGACucuauCG-CGGUAUUCCGGU- -5'
9494 3' -53.3 NC_002531.1 + 54113 0.75 0.522502
Target:  5'- uUCCACUG-GAggAGCGCCAgcuuuaauuAGGCCu -3'
miRNA:   3'- -AGGUGACuCUa-UCGCGGUau-------UCCGGu -5'
9494 3' -53.3 NC_002531.1 + 50188 0.79 0.315761
Target:  5'- cCCugUGAGGUGGC-UCAUGAGGCCc -3'
miRNA:   3'- aGGugACUCUAUCGcGGUAUUCCGGu -5'
9494 3' -53.3 NC_002531.1 + 61957 1.1 0.003261
Target:  5'- aUCCACUGAGAUAGCGCCAUAAGGCCAg -3'
miRNA:   3'- -AGGUGACUCUAUCGCGGUAUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.