miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9494 5' -54 NC_002531.1 + 74452 0.66 0.920632
Target:  5'- --aAGCCUgcgaccaGCCGCAGCagcaccgcucUGCAGUGGa -3'
miRNA:   3'- aaaUCGGAag-----UGGUGUCG----------GUGUCGCC- -5'
9494 5' -54 NC_002531.1 + 87226 0.66 0.918875
Target:  5'- ---cGCCUUCuaaCAggcugugaaaugcuCGGCCugGGCGGg -3'
miRNA:   3'- aaauCGGAAGug-GU--------------GUCGGugUCGCC- -5'
9494 5' -54 NC_002531.1 + 66279 0.66 0.914686
Target:  5'- -aUGGCCUgUCACCGCA-CCAUggAGCa- -3'
miRNA:   3'- aaAUCGGA-AGUGGUGUcGGUG--UCGcc -5'
9494 5' -54 NC_002531.1 + 8913 0.67 0.902024
Target:  5'- aUUGGCUguggcaACUACAGaCCGCAGCa- -3'
miRNA:   3'- aAAUCGGaag---UGGUGUC-GGUGUCGcc -5'
9494 5' -54 NC_002531.1 + 36009 0.67 0.902024
Target:  5'- -aUGGCCgUUGCC--GGCCACGGgGGc -3'
miRNA:   3'- aaAUCGGaAGUGGugUCGGUGUCgCC- -5'
9494 5' -54 NC_002531.1 + 42492 0.67 0.895315
Target:  5'- ---uGUCUUCugCACGGUCuuuGGCGGu -3'
miRNA:   3'- aaauCGGAAGugGUGUCGGug-UCGCC- -5'
9494 5' -54 NC_002531.1 + 45109 0.67 0.881154
Target:  5'- -aUGGCC-UCAUaGCAGCaagACAGUGGg -3'
miRNA:   3'- aaAUCGGaAGUGgUGUCGg--UGUCGCC- -5'
9494 5' -54 NC_002531.1 + 77695 0.67 0.873712
Target:  5'- --aGGaCCcUCAUCACGGCCcgAGCGGu -3'
miRNA:   3'- aaaUC-GGaAGUGGUGUCGGugUCGCC- -5'
9494 5' -54 NC_002531.1 + 55126 0.67 0.866036
Target:  5'- -aUGGCCgggUCGCCAUgcuGCCAUGcCGGg -3'
miRNA:   3'- aaAUCGGa--AGUGGUGu--CGGUGUcGCC- -5'
9494 5' -54 NC_002531.1 + 44181 0.68 0.858133
Target:  5'- -aUGGCCUagagaaccagCACUugGuCCGCAGCGGc -3'
miRNA:   3'- aaAUCGGAa---------GUGGugUcGGUGUCGCC- -5'
9494 5' -54 NC_002531.1 + 46673 0.68 0.850008
Target:  5'- --cAGCuCUUUACCGCAGaCCACcauuccaguuucGGUGGu -3'
miRNA:   3'- aaaUCG-GAAGUGGUGUC-GGUG------------UCGCC- -5'
9494 5' -54 NC_002531.1 + 123003 0.68 0.841671
Target:  5'- --gGGCUgUUCGCCaACAGCCauGCAGCuGGc -3'
miRNA:   3'- aaaUCGG-AAGUGG-UGUCGG--UGUCG-CC- -5'
9494 5' -54 NC_002531.1 + 113451 0.69 0.815455
Target:  5'- --cAGCCgcaccaGCCACucGCCGCAGaCGGu -3'
miRNA:   3'- aaaUCGGaag---UGGUGu-CGGUGUC-GCC- -5'
9494 5' -54 NC_002531.1 + 48903 0.69 0.797064
Target:  5'- -gUGGCCUccaUCACCACAGaCAUGG-GGa -3'
miRNA:   3'- aaAUCGGA---AGUGGUGUCgGUGUCgCC- -5'
9494 5' -54 NC_002531.1 + 82761 0.7 0.768293
Target:  5'- ---uGCCUccgaUCGgCACAuGCCACAGgGGg -3'
miRNA:   3'- aaauCGGA----AGUgGUGU-CGGUGUCgCC- -5'
9494 5' -54 NC_002531.1 + 81685 0.7 0.737328
Target:  5'- -gUAGgCUUCccaaaaaGCCACAGcCCGCAGCaGGu -3'
miRNA:   3'- aaAUCgGAAG-------UGGUGUC-GGUGUCG-CC- -5'
9494 5' -54 NC_002531.1 + 44070 0.7 0.71786
Target:  5'- --aAGCU---GCCACGGCCACGGUGu -3'
miRNA:   3'- aaaUCGGaagUGGUGUCGGUGUCGCc -5'
9494 5' -54 NC_002531.1 + 61994 1.07 0.003878
Target:  5'- uUUUAGCCUUCACCACAGCCACAGCGGc -3'
miRNA:   3'- -AAAUCGGAAGUGGUGUCGGUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.