Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9495 | 3' | -52.9 | NC_002531.1 | + | 64278 | 1.06 | 0.00532 |
Target: 5'- uUUUAACCGCAGAUGGAAGCCCCCAACc -3' miRNA: 3'- -AAAUUGGCGUCUACCUUCGGGGGUUG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 66482 | 0.66 | 0.950879 |
Target: 5'- ---cACCGCAGGU---GGCCaCCCAAUc -3' miRNA: 3'- aaauUGGCGUCUAccuUCGG-GGGUUG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 61453 | 0.66 | 0.946407 |
Target: 5'- ---cACCGgAagaaugaggauGAUGGAAGCCaCCAACa -3' miRNA: 3'- aaauUGGCgU-----------CUACCUUCGGgGGUUG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 91084 | 0.66 | 0.941676 |
Target: 5'- --cGACCGCAuGAUGGggGUggCaCAGCa -3' miRNA: 3'- aaaUUGGCGU-CUACCuuCGggG-GUUG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 116611 | 0.66 | 0.941676 |
Target: 5'- --cGGCCGCuu-UGGggGUCCCUg-- -3' miRNA: 3'- aaaUUGGCGucuACCuuCGGGGGuug -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 116884 | 0.67 | 0.901154 |
Target: 5'- --aAACCuuGGGgacuuagaguUGGAGGCCCCUGGCu -3' miRNA: 3'- aaaUUGGcgUCU----------ACCUUCGGGGGUUG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 102826 | 0.68 | 0.879875 |
Target: 5'- --gAGCCaGUAGAaaaUGGAgaucccccugGGCCCCCAGg -3' miRNA: 3'- aaaUUGG-CGUCU---ACCU----------UCGGGGGUUg -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 10359 | 0.71 | 0.744565 |
Target: 5'- -cUGACCGCAGA-GGAgcGGuUCCCCAugACa -3' miRNA: 3'- aaAUUGGCGUCUaCCU--UC-GGGGGU--UG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 67400 | 0.71 | 0.734285 |
Target: 5'- aUUUGGCUGCcua-GGcAGCCCCCAACu -3' miRNA: 3'- -AAAUUGGCGucuaCCuUCGGGGGUUG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 29918 | 0.75 | 0.521487 |
Target: 5'- gUUUGGgUGCAGAacuguagcagcuUGuGAAGCCCCCAACc -3' miRNA: 3'- -AAAUUgGCGUCU------------AC-CUUCGGGGGUUG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 118405 | 0.7 | 0.781566 |
Target: 5'- -aUAGCC-CAGAUGGGccaggggcucaagaGGUCCCCGAg -3' miRNA: 3'- aaAUUGGcGUCUACCU--------------UCGGGGGUUg -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 112529 | 0.69 | 0.830886 |
Target: 5'- ---uACUGCAGAUGGucuccuAAGCCCCUu-- -3' miRNA: 3'- aaauUGGCGUCUACC------UUCGGGGGuug -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 103961 | 0.68 | 0.88722 |
Target: 5'- --aAGCgGCAGcgGUGGAagugGGCCCCCu-- -3' miRNA: 3'- aaaUUGgCGUC--UACCU----UCGGGGGuug -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 66805 | 0.67 | 0.907735 |
Target: 5'- --aAACCaGCauuaggcaaAGAUGGAAGCCCUCu-- -3' miRNA: 3'- aaaUUGG-CG---------UCUACCUUCGGGGGuug -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 17529 | 0.67 | 0.925899 |
Target: 5'- gUUGACCGUAGuucuccUGcGAuaucCCCCCAGCa -3' miRNA: 3'- aAAUUGGCGUCu-----AC-CUuc--GGGGGUUG- -5' |
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9495 | 3' | -52.9 | NC_002531.1 | + | 112724 | 0.75 | 0.49083 |
Target: 5'- -aUGugUGCAGcUGGGcAGCCCCCAAUu -3' miRNA: 3'- aaAUugGCGUCuACCU-UCGGGGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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