miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9496 3' -50.6 NC_002531.1 + 81123 0.66 0.989054
Target:  5'- uGCUGUUGCCGGuGCugucuuggaACAGGGUgCUg- -3'
miRNA:   3'- cUGAUAACGGUUuCG---------UGUCCCA-GAga -5'
9496 3' -50.6 NC_002531.1 + 96189 0.66 0.98751
Target:  5'- uGGCUGaUGCCGAAGCauacaccgcgGCAGuaUCUCg -3'
miRNA:   3'- -CUGAUaACGGUUUCG----------UGUCccAGAGa -5'
9496 3' -50.6 NC_002531.1 + 12075 0.67 0.977146
Target:  5'- cGCUGUggcgGCC-GAGCu--GGGUCUCa -3'
miRNA:   3'- cUGAUAa---CGGuUUCGuguCCCAGAGa -5'
9496 3' -50.6 NC_002531.1 + 12173 0.67 0.977146
Target:  5'- cGACUGUUGCCAG-----GGGGUaCUCUu -3'
miRNA:   3'- -CUGAUAACGGUUucgugUCCCA-GAGA- -5'
9496 3' -50.6 NC_002531.1 + 458 0.67 0.968472
Target:  5'- uGACUGUUuuuagGCCuaacaAAGGCACAGaaacacccgugcGGUCUCUg -3'
miRNA:   3'- -CUGAUAA-----CGG-----UUUCGUGUC------------CCAGAGA- -5'
9496 3' -50.6 NC_002531.1 + 12971 0.68 0.949224
Target:  5'- ---aGUUGCCAGuauguGUACcggGGGGUCUCUu -3'
miRNA:   3'- cugaUAACGGUUu----CGUG---UCCCAGAGA- -5'
9496 3' -50.6 NC_002531.1 + 75441 0.68 0.944603
Target:  5'- -gUUAUUGCCGGAGgGCAGGGg---- -3'
miRNA:   3'- cuGAUAACGGUUUCgUGUCCCagaga -5'
9496 3' -50.6 NC_002531.1 + 56508 0.68 0.944603
Target:  5'- uGACUGUUGuCUAAGGCcuGguGGGUuCUCa -3'
miRNA:   3'- -CUGAUAAC-GGUUUCG--UguCCCA-GAGa -5'
9496 3' -50.6 NC_002531.1 + 34889 0.69 0.93921
Target:  5'- uACUGuUUGCCAAGGCuauagauGCGGGGUUcaUCa -3'
miRNA:   3'- cUGAU-AACGGUUUCG-------UGUCCCAG--AGa -5'
9496 3' -50.6 NC_002531.1 + 80901 0.72 0.834679
Target:  5'- -cCUucUGCCAGAGC--AGGGUCUCUu -3'
miRNA:   3'- cuGAuaACGGUUUCGugUCCCAGAGA- -5'
9496 3' -50.6 NC_002531.1 + 68987 1.07 0.008345
Target:  5'- uGACUAUUGCCAAAGCACAGGGUCUCUc -3'
miRNA:   3'- -CUGAUAACGGUUUCGUGUCCCAGAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.