miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9498 5' -49.3 NC_002531.1 + 99138 0.66 0.998249
Target:  5'- aCUUUACuGACAuaacAUAcuCAGACUGGGu -3'
miRNA:   3'- gGAGAUGuCUGU----UAUacGUCUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 19827 0.66 0.997899
Target:  5'- aCCUUcagGCAGACAuaGUGCc-AUCGGGu -3'
miRNA:   3'- -GGAGa--UGUCUGUuaUACGucUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 34382 0.66 0.997492
Target:  5'- aCCgg-GCGGACAuacgGUGuCAGGCCcuuGGGa -3'
miRNA:   3'- -GGagaUGUCUGUua--UAC-GUCUGG---CCC- -5'
9498 5' -49.3 NC_002531.1 + 53602 0.66 0.997022
Target:  5'- --gCUGCAGAUcaggcuGUAUGCAcACUGGGc -3'
miRNA:   3'- ggaGAUGUCUGu-----UAUACGUcUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 92415 0.66 0.996481
Target:  5'- --cCUGCGGACGuggacccgaAUGUGC--ACCGGGu -3'
miRNA:   3'- ggaGAUGUCUGU---------UAUACGucUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 112740 0.67 0.994355
Target:  5'- aCUCUAgGGGgGAUgaauguGUGCAG-CUGGGc -3'
miRNA:   3'- gGAGAUgUCUgUUA------UACGUCuGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 2587 0.67 0.99345
Target:  5'- aCCUUUAa--ACcuUAUGUAGACUGGGa -3'
miRNA:   3'- -GGAGAUgucUGuuAUACGUCUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 68609 0.69 0.983445
Target:  5'- --aCUACAGGcCAGUucacUGUGGGCUGGGg -3'
miRNA:   3'- ggaGAUGUCU-GUUAu---ACGUCUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 12496 0.69 0.976669
Target:  5'- cCCaugCUGCAGAUAGUAgcuguUGUAGACauuGGGc -3'
miRNA:   3'- -GGa--GAUGUCUGUUAU-----ACGUCUGg--CCC- -5'
9498 5' -49.3 NC_002531.1 + 30332 0.69 0.974012
Target:  5'- -gUCUguagACAGACAGUGaGCGgGugCGGGa -3'
miRNA:   3'- ggAGA----UGUCUGUUAUaCGU-CugGCCC- -5'
9498 5' -49.3 NC_002531.1 + 10508 0.7 0.972316
Target:  5'- gCCUCgggGCAGAgAAgcagcccauacCAGGCCGGGa -3'
miRNA:   3'- -GGAGa--UGUCUgUUauac-------GUCUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 11370 0.71 0.953344
Target:  5'- gUCUCUugGGAgacaAGUAUGCcgAGGCgGGGg -3'
miRNA:   3'- -GGAGAugUCUg---UUAUACG--UCUGgCCC- -5'
9498 5' -49.3 NC_002531.1 + 58735 0.71 0.952926
Target:  5'- aCUUUACGGugGAUcaccuacAUGacuuGGACCGGGa -3'
miRNA:   3'- gGAGAUGUCugUUA-------UACg---UCUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 70438 0.72 0.917893
Target:  5'- gUUUUGCAGACugg--GCGGuACCGGGa -3'
miRNA:   3'- gGAGAUGUCUGuuauaCGUC-UGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 93258 0.73 0.905419
Target:  5'- aCCUCUACAGugGGccuaccGACCGGGc -3'
miRNA:   3'- -GGAGAUGUCugUUauacguCUGGCCC- -5'
9498 5' -49.3 NC_002531.1 + 30454 0.74 0.861963
Target:  5'- uCCUCggACAGAUAGUucGCGGAUgCGGGg -3'
miRNA:   3'- -GGAGa-UGUCUGUUAuaCGUCUG-GCCC- -5'
9498 5' -49.3 NC_002531.1 + 77854 1.15 0.005505
Target:  5'- gCCUCUACAGACAAUAUGCAGACCGGGg -3'
miRNA:   3'- -GGAGAUGUCUGUUAUACGUCUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.