Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9499 | 3' | -55.8 | NC_002531.1 | + | 35502 | 0.66 | 0.843107 |
Target: 5'- gUUCCUGCUCaGGGAGGCCGu--GGc- -3' miRNA: 3'- -AAGGGCGAGaUCUUCCGGUguuCCua -5' |
|||||||
9499 | 3' | -55.8 | NC_002531.1 | + | 11411 | 0.67 | 0.807937 |
Target: 5'- cUCCCGCUCcuccacGGGGUCACGGuGGAg -3' miRNA: 3'- aAGGGCGAGauc---UUCCGGUGUU-CCUa -5' |
|||||||
9499 | 3' | -55.8 | NC_002531.1 | + | 118470 | 0.68 | 0.709372 |
Target: 5'- -cCCCGagggaCUAGAAGGaCCugAAGGAg -3' miRNA: 3'- aaGGGCga---GAUCUUCC-GGugUUCCUa -5' |
|||||||
9499 | 3' | -55.8 | NC_002531.1 | + | 51794 | 0.72 | 0.510057 |
Target: 5'- -aCCUGCUCUAGuaaguAGGUCACA-GGAUc -3' miRNA: 3'- aaGGGCGAGAUCu----UCCGGUGUuCCUA- -5' |
|||||||
9499 | 3' | -55.8 | NC_002531.1 | + | 78055 | 1.03 | 0.004654 |
Target: 5'- aUUCCCGCUCUAGAAGGCCACAAGGAUu -3' miRNA: 3'- -AAGGGCGAGAUCUUCCGGUGUUCCUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home