miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
95 3' -64.7 AC_000006.1 + 25172 0.66 0.227557
Target:  5'- cUCGCGGCucagguacuccgaGGUCGUGcaGCCCgGCcuGCAg -3'
miRNA:   3'- -GGCGCCGug-----------CCAGCAC--CGGGgCG--CGU- -5'
95 3' -64.7 AC_000006.1 + 10775 0.66 0.219641
Target:  5'- cCCGCGuGCAgcugcagaaGGaCGUGcGCCCgGCGUAc -3'
miRNA:   3'- -GGCGC-CGUg--------CCaGCAC-CGGGgCGCGU- -5'
95 3' -64.7 AC_000006.1 + 28845 0.66 0.219641
Target:  5'- aCCGCGGCugGcGcgucaggaUCGU-GCCCgacgaGCGCAc -3'
miRNA:   3'- -GGCGCCGugC-C--------AGCAcCGGGg----CGCGU- -5'
95 3' -64.7 AC_000006.1 + 25483 0.66 0.214131
Target:  5'- cCUGgGGCAUGGcCGagcGGCUCCGCauccaGCAa -3'
miRNA:   3'- -GGCgCCGUGCCaGCa--CCGGGGCG-----CGU- -5'
95 3' -64.7 AC_000006.1 + 22673 0.66 0.19831
Target:  5'- cCCGUGGCccCGGggcggaGUGGCCUCuCGCu -3'
miRNA:   3'- -GGCGCCGu-GCCag----CACCGGGGcGCGu -5'
95 3' -64.7 AC_000006.1 + 17125 0.66 0.19831
Target:  5'- uCCGUGGuCACaucgugGGUCGgGGCCaCCGUGgGg -3'
miRNA:   3'- -GGCGCC-GUG------CCAGCaCCGG-GGCGCgU- -5'
95 3' -64.7 AC_000006.1 + 22852 0.67 0.188337
Target:  5'- gCGCGGCACGuUCGccGGCUgCGuCGCc -3'
miRNA:   3'- gGCGCCGUGCcAGCa-CCGGgGC-GCGu -5'
95 3' -64.7 AC_000006.1 + 5250 0.67 0.18785
Target:  5'- cUCGUaguugagGGCcucgGCGG-CGUGGCCCUugGCGCGg -3'
miRNA:   3'- -GGCG-------CCG----UGCCaGCACCGGGG--CGCGU- -5'
95 3' -64.7 AC_000006.1 + 6215 0.67 0.186396
Target:  5'- gCCGCGGUuaugcagggugaccaGGUCcacgcugGUGGCCaccucgCCGCGCAg -3'
miRNA:   3'- -GGCGCCGug-------------CCAG-------CACCGG------GGCGCGU- -5'
95 3' -64.7 AC_000006.1 + 21739 0.67 0.174206
Target:  5'- cCCGCuGC-CGGUCGUGGCgCUGUc-- -3'
miRNA:   3'- -GGCGcCGuGCCAGCACCGgGGCGcgu -5'
95 3' -64.7 AC_000006.1 + 14096 0.68 0.161027
Target:  5'- uCCGCaGGCgGCGGagUCG-GGCCCC-UGCAc -3'
miRNA:   3'- -GGCG-CCG-UGCC--AGCaCCGGGGcGCGU- -5'
95 3' -64.7 AC_000006.1 + 8364 0.68 0.161027
Target:  5'- -gGCGGCAgaggcacguCGG-CGUGGCgCUCGgGCAg -3'
miRNA:   3'- ggCGCCGU---------GCCaGCACCG-GGGCgCGU- -5'
95 3' -64.7 AC_000006.1 + 17021 0.69 0.133714
Target:  5'- uCCGCGGCACGGcaCGcGGCCguucaUGgGCAc -3'
miRNA:   3'- -GGCGCCGUGCCa-GCaCCGGg----GCgCGU- -5'
95 3' -64.7 AC_000006.1 + 17273 0.69 0.13018
Target:  5'- aCUGCGGCAUcaucgaGGggGUGGCCaucuuCGCGCGu -3'
miRNA:   3'- -GGCGCCGUG------CCagCACCGGg----GCGCGU- -5'
95 3' -64.7 AC_000006.1 + 11079 0.69 0.120087
Target:  5'- aUCGCGcGCGaGGagGUGGCCCUGgGCc -3'
miRNA:   3'- -GGCGC-CGUgCCagCACCGGGGCgCGu -5'
95 3' -64.7 AC_000006.1 + 19579 0.7 0.113768
Target:  5'- gCGCGGCgcGCGGcUCGcaucaUGGCCCgGCGg- -3'
miRNA:   3'- gGCGCCG--UGCC-AGC-----ACCGGGgCGCgu -5'
95 3' -64.7 AC_000006.1 + 10152 0.7 0.099306
Target:  5'- -gGuCGGCACGGUC-UGGCCggugagaCGCGCGc -3'
miRNA:   3'- ggC-GCCGUGCCAGcACCGGg------GCGCGU- -5'
95 3' -64.7 AC_000006.1 + 22290 0.71 0.094021
Target:  5'- gCGCGGCGCuGGgaGUGGCCCCcuccUGCAu -3'
miRNA:   3'- gGCGCCGUG-CCagCACCGGGGc---GCGU- -5'
95 3' -64.7 AC_000006.1 + 24142 0.71 0.089004
Target:  5'- aCGCGcugGCGGUCcaGGCCCuCGCGCAg -3'
miRNA:   3'- gGCGCcg-UGCCAGcaCCGGG-GCGCGU- -5'
95 3' -64.7 AC_000006.1 + 21763 0.72 0.071371
Target:  5'- gCCGCGGCGCGGgCGcaggcucccuaUGGUCCUgaGCGUAg -3'
miRNA:   3'- -GGCGCCGUGCCaGC-----------ACCGGGG--CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.