miRNA: 3'- -GGCGC-CGUg--------CCaGCAC-CGGGgCGCGU- -5'
miRNA: 3'- -GGCGCCGugC-C--------AGCAcCGGGg----CGCGU- -5'
miRNA: 3'- -GGCGCCGug-----------CCAGCAC--CGGGgCG--CGU- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 95 | 3' | -64.7 | AC_000006.1 | + | 10775 | 0.66 | 0.219641 |
|
Target: 5'- cCCGCGuGCAgcugcagaaGGaCGUGcGCCCgGCGUAc -3' miRNA: 3'- -GGCGC-CGUg--------CCaGCAC-CGGGgCGCGU- -5' |
|||||||
| 95 | 3' | -64.7 | AC_000006.1 | + | 28845 | 0.66 | 0.219641 |
|
Target: 5'- aCCGCGGCugGcGcgucaggaUCGU-GCCCgacgaGCGCAc -3' miRNA: 3'- -GGCGCCGugC-C--------AGCAcCGGGg----CGCGU- -5' |
|||||||
| 95 | 3' | -64.7 | AC_000006.1 | + | 25172 | 0.66 | 0.227557 |
|
Target: 5'- cUCGCGGCucagguacuccgaGGUCGUGcaGCCCgGCcuGCAg -3' miRNA: 3'- -GGCGCCGug-----------CCAGCAC--CGGGgCG--CGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home