miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
95 5' -54.4 AC_000006.1 + 26805 1.09 0.00062
Target:  5'- gCUCAUGCAAUGCGUGGACACGGCCACc -3'
miRNA:   3'- -GAGUACGUUACGCACCUGUGCCGGUG- -5'
95 5' -54.4 AC_000006.1 + 574 0.71 0.306325
Target:  5'- cCUCcUGCcuggaacuGUGCccuUGGACAUGGCCGCa -3'
miRNA:   3'- -GAGuACGu-------UACGc--ACCUGUGCCGGUG- -5'
95 5' -54.4 AC_000006.1 + 12993 0.71 0.314377
Target:  5'- -aCcgGCAGUGCccuGUGGGauCACGGCUGCa -3'
miRNA:   3'- gaGuaCGUUACG---CACCU--GUGCCGGUG- -5'
95 5' -54.4 AC_000006.1 + 21302 0.7 0.38449
Target:  5'- gUUGUGCGccGCGcUGGGgAgGGCCACg -3'
miRNA:   3'- gAGUACGUuaCGC-ACCUgUgCCGGUG- -5'
95 5' -54.4 AC_000006.1 + 14594 0.68 0.485465
Target:  5'- --gGUGCAGU-CGUGGACGCuGCuCACc -3'
miRNA:   3'- gagUACGUUAcGCACCUGUGcCG-GUG- -5'
95 5' -54.4 AC_000006.1 + 17454 0.68 0.496265
Target:  5'- ----gGCGG-GCGgGGACGCGGCgCACg -3'
miRNA:   3'- gaguaCGUUaCGCaCCUGUGCCG-GUG- -5'
95 5' -54.4 AC_000006.1 + 17285 0.67 0.533746
Target:  5'- --aGUGCAGcGCGagauaaacagccgucUGGACccGCGGCCGCc -3'
miRNA:   3'- gagUACGUUaCGC---------------ACCUG--UGCCGGUG- -5'
95 5' -54.4 AC_000006.1 + 29405 0.67 0.540468
Target:  5'- cCUCcuuUGUcuugGCGUGGACGCGcGCCu- -3'
miRNA:   3'- -GAGu--ACGuua-CGCACCUGUGC-CGGug -5'
95 5' -54.4 AC_000006.1 + 19567 0.66 0.597411
Target:  5'- --gGUGCAGUgGCGgcgcGGcGCGCGGCuCGCa -3'
miRNA:   3'- gagUACGUUA-CGCa---CC-UGUGCCG-GUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.