miRNA: 3'- -GACAGGUCGCuACCCUAG-GGacaCGA- -5'
miRNA: 3'- gacAGGUCGCUAC-C-CUAGGGaCACGA- -5'
miRNA: 3'- -GACAGGUCGCUACCCUAGGGACACGA- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 950 | 5' | -56.9 | NC_000902.1 | + | 25240 | 0.66 | 0.623332 |
|
Target: 5'- gCUGUCCGGUG-UGGGGUCaCC---GCUa -3' miRNA: 3'- -GACAGGUCGCuACCCUAG-GGacaCGA- -5' |
|||||||
| 950 | 5' | -56.9 | NC_000902.1 | + | 29830 | 0.69 | 0.445677 |
|
Target: 5'- --aUCCAGCGAUGaGcGGUCUCcGUGCUc -3' miRNA: 3'- gacAGGUCGCUAC-C-CUAGGGaCACGA- -5' |
|||||||
| 950 | 5' | -56.9 | NC_000902.1 | + | 14031 | 1.07 | 0.00098 |
|
Target: 5'- cCUGUCCAGCGAUGGGAUCCCUGUGCUc -3' miRNA: 3'- -GACAGGUCGCUACCCUAGGGACACGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home