miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9500 3' -59.2 NC_002531.1 + 114813 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114698 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114640 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 119702 0.67 0.705879
Target:  5'- --aGGGCCcacuugGACCagauGGCCcugaGGGACCa -3'
miRNA:   3'- acaCCCGG------UUGGg---CCGGuua-CCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114060 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 54152 0.67 0.705879
Target:  5'- --aGGGCCuuggagcgcucGCCCaGCUugcGUGGGGCCc -3'
miRNA:   3'- acaCCCGGu----------UGGGcCGGu--UACCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114002 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114118 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114176 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114234 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114292 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114582 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114524 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 94021 0.67 0.705879
Target:  5'- --cGGGCCA----GGCUggUGGGGCUg -3'
miRNA:   3'- acaCCCGGUugggCCGGuuACCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114466 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114408 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114350 0.67 0.705879
Target:  5'- --gGGGCCAccuagccagccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU------------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 49064 0.67 0.69595
Target:  5'- gGUGGGCCAgauaucucACCCG-CCA---GGGCUg -3'
miRNA:   3'- aCACCCGGU--------UGGGCcGGUuacCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 114756 0.67 0.69595
Target:  5'- --gGGGCCAccuagccaccaGCCCGGggac-GGGGCCa -3'
miRNA:   3'- acaCCCGGU-----------UGGGCCgguuaCCCUGG- -5'
9500 3' -59.2 NC_002531.1 + 101441 0.67 0.685969
Target:  5'- -uUGGGCuCAGggacCCCGGCCAuuAUGaGACUg -3'
miRNA:   3'- acACCCG-GUU----GGGCCGGU--UACcCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.