Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9501 | 5' | -51.8 | NC_002531.1 | + | 82626 | 1.09 | 0.005624 |
Target: 5'- cCGAUGCUGGUGGCCAACAUUGACAGUg -3' miRNA: 3'- -GCUACGACCACCGGUUGUAACUGUCA- -5' |
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9501 | 5' | -51.8 | NC_002531.1 | + | 91092 | 0.71 | 0.803967 |
Target: 5'- uGAUGggGGUGGCaCAGCAUacuaguugaugUGACAGc -3' miRNA: 3'- gCUACgaCCACCG-GUUGUA-----------ACUGUCa -5' |
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9501 | 5' | -51.8 | NC_002531.1 | + | 77314 | 0.68 | 0.925172 |
Target: 5'- gGGUGCUGGgguaaaauccucuUGGCCAcACA--GACAGa -3' miRNA: 3'- gCUACGACC-------------ACCGGU-UGUaaCUGUCa -5' |
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9501 | 5' | -51.8 | NC_002531.1 | + | 22401 | 0.67 | 0.962542 |
Target: 5'- ------gGGUGGCCAACAUUcuGCAGUg -3' miRNA: 3'- gcuacgaCCACCGGUUGUAAc-UGUCA- -5' |
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9501 | 5' | -51.8 | NC_002531.1 | + | 44665 | 0.66 | 0.966016 |
Target: 5'- -cGUGCucUGGUGGCCAACuUUGAa--- -3' miRNA: 3'- gcUACG--ACCACCGGUUGuAACUguca -5' |
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9501 | 5' | -51.8 | NC_002531.1 | + | 49618 | 0.66 | 0.975067 |
Target: 5'- ---aGCUGGUGGCC-GCAUaGcCAGc -3' miRNA: 3'- gcuaCGACCACCGGuUGUAaCuGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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