miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9502 5' -50.8 NC_002531.1 + 44559 0.66 0.983626
Target:  5'- cGGCCAguGACAuUaaaaacagcuuuaaUGCCCUAACCCaUAUCa -3'
miRNA:   3'- -UUGGU--UUGUuA--------------GCGGGAUUGGG-GUAG- -5'
9502 5' -50.8 NC_002531.1 + 38215 0.66 0.982183
Target:  5'- aGACCuuGCGGUgUGCCUgUAACCCCGc- -3'
miRNA:   3'- -UUGGuuUGUUA-GCGGG-AUUGGGGUag -5'
9502 5' -50.8 NC_002531.1 + 121435 0.66 0.982183
Target:  5'- cAUUAuACAGuUCGCUCUcuACCCCGUCu -3'
miRNA:   3'- uUGGUuUGUU-AGCGGGAu-UGGGGUAG- -5'
9502 5' -50.8 NC_002531.1 + 10357 0.66 0.979959
Target:  5'- --aCGGGCAAUUcuCCCUGacccgGCCCCGUCu -3'
miRNA:   3'- uugGUUUGUUAGc-GGGAU-----UGGGGUAG- -5'
9502 5' -50.8 NC_002531.1 + 100552 0.66 0.979959
Target:  5'- gAugCAAAgGAU-GCCCUcACCCCAc- -3'
miRNA:   3'- -UugGUUUgUUAgCGGGAuUGGGGUag -5'
9502 5' -50.8 NC_002531.1 + 43858 0.66 0.977534
Target:  5'- cGGgCAAACAcaaaCGCCCUGACCCa--- -3'
miRNA:   3'- -UUgGUUUGUua--GCGGGAUUGGGguag -5'
9502 5' -50.8 NC_002531.1 + 102383 0.67 0.972048
Target:  5'- -cCCAAAC---CGCCCcagGACCCCAa- -3'
miRNA:   3'- uuGGUUUGuuaGCGGGa--UUGGGGUag -5'
9502 5' -50.8 NC_002531.1 + 12285 0.67 0.965656
Target:  5'- gAACCGGGuCGcgCGCCaggcCCCCAUCc -3'
miRNA:   3'- -UUGGUUU-GUuaGCGGgauuGGGGUAG- -5'
9502 5' -50.8 NC_002531.1 + 23494 0.68 0.954245
Target:  5'- cAACCAAGCAGUCuaCCUAcaucuACCCUu-- -3'
miRNA:   3'- -UUGGUUUGUUAGcgGGAU-----UGGGGuag -5'
9502 5' -50.8 NC_002531.1 + 68393 0.68 0.949932
Target:  5'- aAACUggGCAuaugUGCCCauaAACCCCAUa -3'
miRNA:   3'- -UUGGuuUGUua--GCGGGa--UUGGGGUAg -5'
9502 5' -50.8 NC_002531.1 + 45622 0.68 0.945356
Target:  5'- cGCCuAGAgAAUCGCCCgcuGCCUCAc- -3'
miRNA:   3'- uUGG-UUUgUUAGCGGGau-UGGGGUag -5'
9502 5' -50.8 NC_002531.1 + 81884 0.69 0.924368
Target:  5'- cACCAGAC--UCuCCCUGugucuCCCCGUCa -3'
miRNA:   3'- uUGGUUUGuuAGcGGGAUu----GGGGUAG- -5'
9502 5' -50.8 NC_002531.1 + 18995 0.69 0.918443
Target:  5'- aGGCCAAAagguUUGCCCagAACCCUGUCc -3'
miRNA:   3'- -UUGGUUUguu-AGCGGGa-UUGGGGUAG- -5'
9502 5' -50.8 NC_002531.1 + 9899 0.7 0.899055
Target:  5'- cACCaAAGCGGUCGCCUUuagaGACCUCAg- -3'
miRNA:   3'- uUGG-UUUGUUAGCGGGA----UUGGGGUag -5'
9502 5' -50.8 NC_002531.1 + 21800 0.7 0.899055
Target:  5'- cACCA-GCAGUgUGCUCUuugcuAGCCCCAUCa -3'
miRNA:   3'- uUGGUuUGUUA-GCGGGA-----UUGGGGUAG- -5'
9502 5' -50.8 NC_002531.1 + 77180 0.7 0.892062
Target:  5'- cACCcuucuACGAg-GCCCUGACCCCAg- -3'
miRNA:   3'- uUGGuu---UGUUagCGGGAUUGGGGUag -5'
9502 5' -50.8 NC_002531.1 + 99307 0.72 0.817287
Target:  5'- cGGCCAGGCGuucaaGUgGCCCUcgauagacuggauGACCCCAUa -3'
miRNA:   3'- -UUGGUUUGU-----UAgCGGGA-------------UUGGGGUAg -5'
9502 5' -50.8 NC_002531.1 + 24187 0.73 0.759993
Target:  5'- cAGCCAgggAACAGUaaaaGCCCUagaGACCCCAgaUCa -3'
miRNA:   3'- -UUGGU---UUGUUAg---CGGGA---UUGGGGU--AG- -5'
9502 5' -50.8 NC_002531.1 + 84619 1.08 0.007708
Target:  5'- aAACCAAACAAUCGCCCUAACCCCAUCu -3'
miRNA:   3'- -UUGGUUUGUUAGCGGGAUUGGGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.