miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9503 5' -48.5 NC_002531.1 + 34429 0.66 0.997936
Target:  5'- aUAUCUUccaaacggcaacagUGCGGGgGCAUCcccguuUGCUGGGUg -3'
miRNA:   3'- -GUAGAG--------------ACGUUUgUGUAG------ACGAUCCG- -5'
9503 5' -48.5 NC_002531.1 + 13900 0.66 0.997653
Target:  5'- aGUCUCUGCuuGGCAUAggucacguagCUGUccGGCa -3'
miRNA:   3'- gUAGAGACGu-UUGUGUa---------GACGauCCG- -5'
9503 5' -48.5 NC_002531.1 + 24985 0.66 0.997653
Target:  5'- gGUCUCacUGCAAaagcAUACGUCUcgGgaAGGCa -3'
miRNA:   3'- gUAGAG--ACGUU----UGUGUAGA--CgaUCCG- -5'
9503 5' -48.5 NC_002531.1 + 108221 0.66 0.997653
Target:  5'- gGUUUCUaCAAAC-UAUgaGCUGGGCa -3'
miRNA:   3'- gUAGAGAcGUUUGuGUAgaCGAUCCG- -5'
9503 5' -48.5 NC_002531.1 + 69164 0.66 0.997653
Target:  5'- aGUC-CaGCAAACACAUCgugGC--GGCg -3'
miRNA:   3'- gUAGaGaCGUUUGUGUAGa--CGauCCG- -5'
9503 5' -48.5 NC_002531.1 + 25432 0.66 0.99666
Target:  5'- -uUUUCUGCAGACcugucaaugaACAUgaGUUGGGUu -3'
miRNA:   3'- guAGAGACGUUUG----------UGUAgaCGAUCCG- -5'
9503 5' -48.5 NC_002531.1 + 42546 0.67 0.995637
Target:  5'- --gCUCgucagccaggggugGCAGGCGC-UCUGCaUAGGCc -3'
miRNA:   3'- guaGAGa-------------CGUUUGUGuAGACG-AUCCG- -5'
9503 5' -48.5 NC_002531.1 + 62884 0.67 0.993636
Target:  5'- gGUgUCaUGCAAAgGCGUCUGCagaugAGGg -3'
miRNA:   3'- gUAgAG-ACGUUUgUGUAGACGa----UCCg -5'
9503 5' -48.5 NC_002531.1 + 64907 0.67 0.99261
Target:  5'- aCAUUUCUGUAAGCACAg-UGUUuuguGGUc -3'
miRNA:   3'- -GUAGAGACGUUUGUGUagACGAu---CCG- -5'
9503 5' -48.5 NC_002531.1 + 6516 0.68 0.990165
Target:  5'- aGUCUCUaaaGCAGAagGC-UCUGCUguauAGGCg -3'
miRNA:   3'- gUAGAGA---CGUUUg-UGuAGACGA----UCCG- -5'
9503 5' -48.5 NC_002531.1 + 127554 0.68 0.987786
Target:  5'- ---aUCUGCAuaaguaaacagcaaaGACACAccUCUGC-AGGCu -3'
miRNA:   3'- guagAGACGU---------------UUGUGU--AGACGaUCCG- -5'
9503 5' -48.5 NC_002531.1 + 65784 0.69 0.978939
Target:  5'- ----aCUGCuGAUugAUCUGUUGGGUg -3'
miRNA:   3'- guagaGACGuUUGugUAGACGAUCCG- -5'
9503 5' -48.5 NC_002531.1 + 86858 0.7 0.96394
Target:  5'- gGUCUCUGaacugGAGCAUAUCUGUuuUAGuGCc -3'
miRNA:   3'- gUAGAGACg----UUUGUGUAGACG--AUC-CG- -5'
9503 5' -48.5 NC_002531.1 + 124800 0.7 0.96394
Target:  5'- -uUCUCUGCcucuuuGgAUAUCUGCUgaugGGGCu -3'
miRNA:   3'- guAGAGACGuu----UgUGUAGACGA----UCCG- -5'
9503 5' -48.5 NC_002531.1 + 86469 0.71 0.947494
Target:  5'- gGUUUCUGCuccuGGC-CAUggCUGCUGGGUg -3'
miRNA:   3'- gUAGAGACGu---UUGuGUA--GACGAUCCG- -5'
9503 5' -48.5 NC_002531.1 + 50431 0.71 0.936094
Target:  5'- aGUCUggGCuAACACAUCUGCcaugcgagccgcguUGGGCu -3'
miRNA:   3'- gUAGAgaCGuUUGUGUAGACG--------------AUCCG- -5'
9503 5' -48.5 NC_002531.1 + 10653 0.72 0.920843
Target:  5'- -uUCUCUGCcccgAGGCGCggCUGUgagUAGGCa -3'
miRNA:   3'- guAGAGACG----UUUGUGuaGACG---AUCCG- -5'
9503 5' -48.5 NC_002531.1 + 64505 0.75 0.824111
Target:  5'- aAUCUCUGCcagguguccuacauaGGAgGCAUaaGCUAGGCa -3'
miRNA:   3'- gUAGAGACG---------------UUUgUGUAgaCGAUCCG- -5'
9503 5' -48.5 NC_002531.1 + 90121 1.12 0.007274
Target:  5'- cCAUCUCUGCAAACACAUCUGCUAGGCc -3'
miRNA:   3'- -GUAGAGACGUUUGUGUAGACGAUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.