miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9506 5' -54.5 NC_002531.1 + 80546 0.66 0.94361
Target:  5'- cCCAUGUaaGUGGGgucgaUGAGCCCGgGGUGa -3'
miRNA:   3'- -GGUGCAggCGUCC-----AUUUGGGUgUCGC- -5'
9506 5' -54.5 NC_002531.1 + 49640 0.66 0.936993
Target:  5'- aCCACGUaCUGUAGGUcagugcagcugguGGCCgCAUAGCc -3'
miRNA:   3'- -GGUGCA-GGCGUCCAu------------UUGG-GUGUCGc -5'
9506 5' -54.5 NC_002531.1 + 123830 0.66 0.928847
Target:  5'- aCugGUCaCGCAGGggcugguAACCgUACAGUa -3'
miRNA:   3'- gGugCAG-GCGUCCau-----UUGG-GUGUCGc -5'
9506 5' -54.5 NC_002531.1 + 44163 0.67 0.917787
Target:  5'- aCUugGUCCGCAGc---GgCCGCAGgGa -3'
miRNA:   3'- -GGugCAGGCGUCcauuUgGGUGUCgC- -5'
9506 5' -54.5 NC_002531.1 + 113402 0.67 0.911892
Target:  5'- gCCAgacgUGUCUGaCAGGUGGcuuuucGCgCCGCAGCa -3'
miRNA:   3'- -GGU----GCAGGC-GUCCAUU------UG-GGUGUCGc -5'
9506 5' -54.5 NC_002531.1 + 48766 0.68 0.864027
Target:  5'- uCUACGUCCGUcuuuguGGGcAGGCCCACcGUc -3'
miRNA:   3'- -GGUGCAGGCG------UCCaUUUGGGUGuCGc -5'
9506 5' -54.5 NC_002531.1 + 124427 0.68 0.864027
Target:  5'- -gACGUuuGgCAGGUAAGCCaccugCugGGCGa -3'
miRNA:   3'- ggUGCAggC-GUCCAUUUGG-----GugUCGC- -5'
9506 5' -54.5 NC_002531.1 + 92435 0.7 0.787607
Target:  5'- uCCACG-CCGCuguGGGUuuACCUGCGGaCGu -3'
miRNA:   3'- -GGUGCaGGCG---UCCAuuUGGGUGUC-GC- -5'
9506 5' -54.5 NC_002531.1 + 53791 0.7 0.778287
Target:  5'- gCCACa-CCGUGGGUAcACUCACAaGCGg -3'
miRNA:   3'- -GGUGcaGGCGUCCAUuUGGGUGU-CGC- -5'
9506 5' -54.5 NC_002531.1 + 66478 0.71 0.708827
Target:  5'- aCCACa-CCGCAGGUGGccACCCAaucuaugUAGCGc -3'
miRNA:   3'- -GGUGcaGGCGUCCAUU--UGGGU-------GUCGC- -5'
9506 5' -54.5 NC_002531.1 + 9053 0.72 0.65873
Target:  5'- -gAUGUuuGCAGGUGGACUguCAGCu -3'
miRNA:   3'- ggUGCAggCGUCCAUUUGGguGUCGc -5'
9506 5' -54.5 NC_002531.1 + 129484 0.73 0.627731
Target:  5'- gCCugGUCCGguGGaUAccAACCCAaguaGGCa -3'
miRNA:   3'- -GGugCAGGCguCC-AU--UUGGGUg---UCGc -5'
9506 5' -54.5 NC_002531.1 + 92272 1.11 0.002621
Target:  5'- uCCACGUCCGCAGGUAAACCCACAGCGg -3'
miRNA:   3'- -GGUGCAGGCGUCCAUUUGGGUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.