miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9507 5' -52.6 NC_002531.1 + 86477 0.66 0.975811
Target:  5'- cUgUCUGugGUUU-CUGCUCCUgGCCa -3'
miRNA:   3'- cAgAGGUugCAGAgGAUGAGGAgUGG- -5'
9507 5' -52.6 NC_002531.1 + 117403 0.66 0.973133
Target:  5'- -cCUCCAucuucuucACGUCcuuuUCCUuuuuCUCCuUCGCCu -3'
miRNA:   3'- caGAGGU--------UGCAG----AGGAu---GAGG-AGUGG- -5'
9507 5' -52.6 NC_002531.1 + 87614 0.66 0.972573
Target:  5'- -aCUCUAuaguggugcacuCGUCUCCUAC-UgUCACCa -3'
miRNA:   3'- caGAGGUu-----------GCAGAGGAUGaGgAGUGG- -5'
9507 5' -52.6 NC_002531.1 + 45511 0.66 0.963822
Target:  5'- aUCUCUAACugGUCUUCUagguaGC-CCUCAUCa -3'
miRNA:   3'- cAGAGGUUG--CAGAGGA-----UGaGGAGUGG- -5'
9507 5' -52.6 NC_002531.1 + 117304 0.67 0.952462
Target:  5'- -cCUCCuuCGcCUCCUuCUCCUCcuucuCCu -3'
miRNA:   3'- caGAGGuuGCaGAGGAuGAGGAGu----GG- -5'
9507 5' -52.6 NC_002531.1 + 93326 0.67 0.946869
Target:  5'- cGUCUCCcgccACGccgaucuguucaucUCUCCUACUCacguaUCACa -3'
miRNA:   3'- -CAGAGGu---UGC--------------AGAGGAUGAGg----AGUGg -5'
9507 5' -52.6 NC_002531.1 + 41731 0.68 0.92313
Target:  5'- ---aCCAACGUUUCCUACgucaUCUC-CCa -3'
miRNA:   3'- cagaGGUUGCAGAGGAUGa---GGAGuGG- -5'
9507 5' -52.6 NC_002531.1 + 117169 0.7 0.870057
Target:  5'- -cCUCCuuCGcCUCCUuCUCCUCcuucGCCu -3'
miRNA:   3'- caGAGGuuGCaGAGGAuGAGGAG----UGG- -5'
9507 5' -52.6 NC_002531.1 + 117133 0.7 0.870057
Target:  5'- -cCUCCuuCGcCUCCUuCUCCUCcuucGCCu -3'
miRNA:   3'- caGAGGuuGCaGAGGAuGAGGAG----UGG- -5'
9507 5' -52.6 NC_002531.1 + 117079 0.7 0.870057
Target:  5'- -cCUCCuuCGcCUCCUuCUCCUCcuucGCCu -3'
miRNA:   3'- caGAGGuuGCaGAGGAuGAGGAG----UGG- -5'
9507 5' -52.6 NC_002531.1 + 24397 0.7 0.854437
Target:  5'- -gUUCCGuCG-CUCCUACcaauggCCUCGCCg -3'
miRNA:   3'- caGAGGUuGCaGAGGAUGa-----GGAGUGG- -5'
9507 5' -52.6 NC_002531.1 + 24315 0.73 0.735117
Target:  5'- -aCUCCAACGUCUUCg---CCUCAUa -3'
miRNA:   3'- caGAGGUUGCAGAGGaugaGGAGUGg -5'
9507 5' -52.6 NC_002531.1 + 102321 1.12 0.003548
Target:  5'- uGUCUCCAACGUCUCCUACUCCUCACCu -3'
miRNA:   3'- -CAGAGGUUGCAGAGGAUGAGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.