miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9508 3' -58.3 NC_002531.1 + 122472 0.66 0.78206
Target:  5'- uGGUGgUGGAgaucucccccaACCAGCUaCCGGCACUg -3'
miRNA:   3'- gCCGUgAUCU-----------UGGUCGG-GGUCGUGGu -5'
9508 3' -58.3 NC_002531.1 + 124000 0.66 0.76324
Target:  5'- aCGGCuucuACUGuacGGuuACCAGCCCCuGCgugACCAg -3'
miRNA:   3'- -GCCG----UGAU---CU--UGGUCGGGGuCG---UGGU- -5'
9508 3' -58.3 NC_002531.1 + 62866 0.66 0.753648
Target:  5'- uGGCcCUcAGAGCCAuCuCCCAGCGCa- -3'
miRNA:   3'- gCCGuGA-UCUUGGUcG-GGGUCGUGgu -5'
9508 3' -58.3 NC_002531.1 + 46967 0.66 0.753648
Target:  5'- uGcCACcccAGAGucaaCAGCCCCAGCGCCu -3'
miRNA:   3'- gCcGUGa--UCUUg---GUCGGGGUCGUGGu -5'
9508 3' -58.3 NC_002531.1 + 130027 0.66 0.743949
Target:  5'- aGGCAcCUGGAAguacuCCGGCCUCAGgagGCCu -3'
miRNA:   3'- gCCGU-GAUCUU-----GGUCGGGGUCg--UGGu -5'
9508 3' -58.3 NC_002531.1 + 35347 0.66 0.734151
Target:  5'- gGGCGCUAugugucugccGGACCuGGCUUCAGCcCCGg -3'
miRNA:   3'- gCCGUGAU----------CUUGG-UCGGGGUCGuGGU- -5'
9508 3' -58.3 NC_002531.1 + 83375 0.66 0.734151
Target:  5'- gGGCAgguCUAGAuCCAGCaCCCAGUuaaaaACUg -3'
miRNA:   3'- gCCGU---GAUCUuGGUCG-GGGUCG-----UGGu -5'
9508 3' -58.3 NC_002531.1 + 115706 0.67 0.714296
Target:  5'- gGGgAC-GGGGCCAGCCCC--CACCu -3'
miRNA:   3'- gCCgUGaUCUUGGUCGGGGucGUGGu -5'
9508 3' -58.3 NC_002531.1 + 12663 0.67 0.694159
Target:  5'- cCGGCuuaAGGACCGGuuccCCCCGGUGCUAc -3'
miRNA:   3'- -GCCGugaUCUUGGUC----GGGGUCGUGGU- -5'
9508 3' -58.3 NC_002531.1 + 58322 0.67 0.684007
Target:  5'- uGGCgACUGGAGCaAGCCCCAagauGCcccCCAu -3'
miRNA:   3'- gCCG-UGAUCUUGgUCGGGGU----CGu--GGU- -5'
9508 3' -58.3 NC_002531.1 + 66334 0.67 0.679933
Target:  5'- aGGguCUGGAAaagugguguucaaCAGCCCCgugcAGCGCCu -3'
miRNA:   3'- gCCguGAUCUUg------------GUCGGGG----UCGUGGu -5'
9508 3' -58.3 NC_002531.1 + 45408 0.67 0.673812
Target:  5'- gCGGCAUgugUAGAAugUCAGCUCUGGgGCCAu -3'
miRNA:   3'- -GCCGUG---AUCUU--GGUCGGGGUCgUGGU- -5'
9508 3' -58.3 NC_002531.1 + 35867 0.68 0.612219
Target:  5'- uGGCAC-AGGcCCAGCCUacgCAGCACa- -3'
miRNA:   3'- gCCGUGaUCUuGGUCGGG---GUCGUGgu -5'
9508 3' -58.3 NC_002531.1 + 54258 0.69 0.581518
Target:  5'- aGGCGCgccGAACC-GCCCUAGUgaACCu -3'
miRNA:   3'- gCCGUGau-CUUGGuCGGGGUCG--UGGu -5'
9508 3' -58.3 NC_002531.1 + 36701 0.69 0.561221
Target:  5'- aGGCACUguuGGGugCAGCCUUugAGCACa- -3'
miRNA:   3'- gCCGUGA---UCUugGUCGGGG--UCGUGgu -5'
9508 3' -58.3 NC_002531.1 + 13064 0.69 0.551145
Target:  5'- aGGUucaUAGAACCugAGCCCCccGCACCu -3'
miRNA:   3'- gCCGug-AUCUUGG--UCGGGGu-CGUGGu -5'
9508 3' -58.3 NC_002531.1 + 49461 0.7 0.511453
Target:  5'- aGGCucGCUGGcuAugCGGCCaCCAGCugCAc -3'
miRNA:   3'- gCCG--UGAUC--UugGUCGG-GGUCGugGU- -5'
9508 3' -58.3 NC_002531.1 + 58480 0.71 0.46361
Target:  5'- gGGCAUcuUGGGGCUuGCUCCAGuCGCCAu -3'
miRNA:   3'- gCCGUG--AUCUUGGuCGGGGUC-GUGGU- -5'
9508 3' -58.3 NC_002531.1 + 63469 0.72 0.427077
Target:  5'- aCGGCACUGGAAUaucuuGGCCCCugGGgGCUAc -3'
miRNA:   3'- -GCCGUGAUCUUGg----UCGGGG--UCgUGGU- -5'
9508 3' -58.3 NC_002531.1 + 103757 0.74 0.336067
Target:  5'- uGGUGCUGGGGCUGGUUCUAGUGCCGg -3'
miRNA:   3'- gCCGUGAUCUUGGUCGGGGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.