miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9508 5' -50.8 NC_002531.1 + 61354 0.66 0.985803
Target:  5'- cACCAGGagagcuACUAGGGCA--CACaAGggUa -3'
miRNA:   3'- -UGGUCU------UGAUCCCGUucGUGaUCuuG- -5'
9508 5' -50.8 NC_002531.1 + 123530 0.66 0.985258
Target:  5'- cCCAGGACUauacccugccAGGcGCGAGCgaagaagaggaagaGCUAGAGu -3'
miRNA:   3'- uGGUCUUGA----------UCC-CGUUCG--------------UGAUCUUg -5'
9508 5' -50.8 NC_002531.1 + 21336 0.66 0.98186
Target:  5'- uACUAGcACUGGGGU--GUugUAGAAUc -3'
miRNA:   3'- -UGGUCuUGAUCCCGuuCGugAUCUUG- -5'
9508 5' -50.8 NC_002531.1 + 38058 0.66 0.98186
Target:  5'- cGCCcc-ACUugGGGGCGAGCGgUGGGAa -3'
miRNA:   3'- -UGGucuUGA--UCCCGUUCGUgAUCUUg -5'
9508 5' -50.8 NC_002531.1 + 41449 0.66 0.98186
Target:  5'- -aCAGAACUagccuGGGGaauCGAGUACUGGGGa -3'
miRNA:   3'- ugGUCUUGA-----UCCC---GUUCGUGAUCUUg -5'
9508 5' -50.8 NC_002531.1 + 34396 0.66 0.979604
Target:  5'- cCCAGAAaaAGGGCGAGag--AGGACc -3'
miRNA:   3'- uGGUCUUgaUCCCGUUCgugaUCUUG- -5'
9508 5' -50.8 NC_002531.1 + 15556 0.66 0.976368
Target:  5'- gGCCAGAACcagcccagcgauucUGGGGuUAAGUGCUcuGAGCu -3'
miRNA:   3'- -UGGUCUUG--------------AUCCC-GUUCGUGAu-CUUG- -5'
9508 5' -50.8 NC_002531.1 + 87695 0.67 0.974477
Target:  5'- aACCAGGAaauuUUGGGGC-AGUAUUAGugGACu -3'
miRNA:   3'- -UGGUCUU----GAUCCCGuUCGUGAUC--UUG- -5'
9508 5' -50.8 NC_002531.1 + 14670 0.67 0.968472
Target:  5'- uUCAuGggUUGGGGCuAGUACUuguGAGCa -3'
miRNA:   3'- uGGU-CuuGAUCCCGuUCGUGAu--CUUG- -5'
9508 5' -50.8 NC_002531.1 + 89742 0.67 0.968472
Target:  5'- uGCCgAGAagcagcuaGCUAGGGCGcGGC-UUAGAGCc -3'
miRNA:   3'- -UGG-UCU--------UGAUCCCGU-UCGuGAUCUUG- -5'
9508 5' -50.8 NC_002531.1 + 76970 0.68 0.953582
Target:  5'- gGCCAacaaagcGACcGGGGCAGaucucGCACUGGGACc -3'
miRNA:   3'- -UGGUc------UUGaUCCCGUU-----CGUGAUCUUG- -5'
9508 5' -50.8 NC_002531.1 + 21826 0.68 0.944602
Target:  5'- gGuuGGGguGCUGGGGUAGGCAUU-GAACc -3'
miRNA:   3'- -UggUCU--UGAUCCCGUUCGUGAuCUUG- -5'
9508 5' -50.8 NC_002531.1 + 54419 0.69 0.923425
Target:  5'- cACCAGGuucACUAGGGCGguucGGCGCgccuGCc -3'
miRNA:   3'- -UGGUCU---UGAUCCCGU----UCGUGaucuUG- -5'
9508 5' -50.8 NC_002531.1 + 68603 0.71 0.868222
Target:  5'- gGCCAGuucacugugGGCUGGGGCAcacAGCACcucaGGGAUg -3'
miRNA:   3'- -UGGUC---------UUGAUCCCGU---UCGUGa---UCUUG- -5'
9508 5' -50.8 NC_002531.1 + 52554 0.71 0.860179
Target:  5'- gACaCAGAGCUGauGGGUGauucuAGCugUGGAACg -3'
miRNA:   3'- -UG-GUCUUGAU--CCCGU-----UCGugAUCUUG- -5'
9508 5' -50.8 NC_002531.1 + 67067 0.71 0.851903
Target:  5'- gGCgGGAGCUGGGaaAAGCACUAGcauuGCc -3'
miRNA:   3'- -UGgUCUUGAUCCcgUUCGUGAUCu---UG- -5'
9508 5' -50.8 NC_002531.1 + 103684 0.74 0.716563
Target:  5'- cACCAGAAUUAGaGCuAGCACcAGAACc -3'
miRNA:   3'- -UGGUCUUGAUCcCGuUCGUGaUCUUG- -5'
9508 5' -50.8 NC_002531.1 + 47146 0.78 0.491453
Target:  5'- cGCUGGAGCUccugcaGGCAGGCGCUGGGGCu -3'
miRNA:   3'- -UGGUCUUGAuc----CCGUUCGUGAUCUUG- -5'
9508 5' -50.8 NC_002531.1 + 103636 1.09 0.00621
Target:  5'- cACCAGAACUAGGGCAAGCACUAGAACc -3'
miRNA:   3'- -UGGUCUUGAUCCCGUUCGUGAUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.