miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9509 3' -50.8 NC_002531.1 + 57170 0.66 0.990221
Target:  5'- aGGGcUCUcuauuaauuuaaACUGCCccGGggUGCucucAGCCa -3'
miRNA:   3'- -CCCaAGG------------UGACGGu-CCuuACGu---UUGG- -5'
9509 3' -50.8 NC_002531.1 + 127327 0.66 0.985423
Target:  5'- ---cUCUACUGCCAccaaaauGGAggGCAGGCg -3'
miRNA:   3'- cccaAGGUGACGGU-------CCUuaCGUUUGg -5'
9509 3' -50.8 NC_002531.1 + 45207 0.67 0.98374
Target:  5'- uGGGUcaguuuccUCCAUagagcgaaUGCCAGGAAUG-AAugUa -3'
miRNA:   3'- -CCCA--------AGGUG--------ACGGUCCUUACgUUugG- -5'
9509 3' -50.8 NC_002531.1 + 96278 0.67 0.98374
Target:  5'- ----cCCGCUGCCccuucuGGGAUGCAguucuucccGACCc -3'
miRNA:   3'- cccaaGGUGACGGu-----CCUUACGU---------UUGG- -5'
9509 3' -50.8 NC_002531.1 + 24841 0.67 0.981701
Target:  5'- aGGGUUCCAUauuCCAGGGucGCA-ACUa -3'
miRNA:   3'- -CCCAAGGUGac-GGUCCUuaCGUuUGG- -5'
9509 3' -50.8 NC_002531.1 + 105293 0.67 0.979476
Target:  5'- ---cUCCACgggUGCCccaGGGAAUGCAugucAACCc -3'
miRNA:   3'- cccaAGGUG---ACGG---UCCUUACGU----UUGG- -5'
9509 3' -50.8 NC_002531.1 + 65591 0.68 0.971598
Target:  5'- uGGUUUgAC-GUCAGG--UGCAGGCCa -3'
miRNA:   3'- cCCAAGgUGaCGGUCCuuACGUUUGG- -5'
9509 3' -50.8 NC_002531.1 + 416 0.68 0.961748
Target:  5'- gGGGUUgcUCGCcccCCAGGAAgUGCAgaGACCg -3'
miRNA:   3'- -CCCAA--GGUGac-GGUCCUU-ACGU--UUGG- -5'
9509 3' -50.8 NC_002531.1 + 55115 0.68 0.957995
Target:  5'- cGGUcUCCACUaugGCCGGGucgccAUGCu-GCCa -3'
miRNA:   3'- cCCA-AGGUGA---CGGUCCu----UACGuuUGG- -5'
9509 3' -50.8 NC_002531.1 + 48853 0.68 0.957995
Target:  5'- cGGUgcgcaaCACUGUCAGG---GCAAACCc -3'
miRNA:   3'- cCCAag----GUGACGGUCCuuaCGUUUGG- -5'
9509 3' -50.8 NC_002531.1 + 10327 0.69 0.94975
Target:  5'- uGGUUgugcugCCACUGCCAGGuguUGaAAGCUa -3'
miRNA:   3'- cCCAA------GGUGACGGUCCuu-ACgUUUGG- -5'
9509 3' -50.8 NC_002531.1 + 130061 0.69 0.94975
Target:  5'- gGGGgggUCC-CUGUCuGGGggucuugugAUGUAAACCa -3'
miRNA:   3'- -CCCa--AGGuGACGGuCCU---------UACGUUUGG- -5'
9509 3' -50.8 NC_002531.1 + 112260 0.69 0.935476
Target:  5'- aGGGUgcaaaC-CUGCaaaggguuaaaUAGGggUGCAAACCu -3'
miRNA:   3'- -CCCAag---GuGACG-----------GUCCuuACGUUUGG- -5'
9509 3' -50.8 NC_002531.1 + 35034 0.7 0.9302
Target:  5'- gGGGUUUCugggcagauCUGCCuuugGGGAGUGuUggGCCa -3'
miRNA:   3'- -CCCAAGGu--------GACGG----UCCUUAC-GuuUGG- -5'
9509 3' -50.8 NC_002531.1 + 62906 0.7 0.918862
Target:  5'- --uUUCCACagUGUCGGGAAaGCAGGCUa -3'
miRNA:   3'- cccAAGGUG--ACGGUCCUUaCGUUUGG- -5'
9509 3' -50.8 NC_002531.1 + 103745 0.7 0.918862
Target:  5'- uGGUUCUAgUGCCGGuucuaauGUGCAGGCg -3'
miRNA:   3'- cCCAAGGUgACGGUCcu-----UACGUUUGg -5'
9509 3' -50.8 NC_002531.1 + 65089 0.71 0.899906
Target:  5'- aGGUUCCcauuACUGUUaacaaaaucugGGGAGUuGCAGGCCa -3'
miRNA:   3'- cCCAAGG----UGACGG-----------UCCUUA-CGUUUGG- -5'
9509 3' -50.8 NC_002531.1 + 108554 0.72 0.847023
Target:  5'- uGGGUgaaUCCagaagaGCUGUCAGGuuUGCAuuCCu -3'
miRNA:   3'- -CCCA---AGG------UGACGGUCCuuACGUuuGG- -5'
9509 3' -50.8 NC_002531.1 + 108374 1.15 0.003295
Target:  5'- gGGGUUCCACUGCCAGGAAUGCAAACCu -3'
miRNA:   3'- -CCCAAGGUGACGGUCCUUACGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.