miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
951 5' -52.3 NC_000902.1 + 16134 0.66 0.877239
Target:  5'- -gAUGUuucGCGUCAGGUgcuAUGGCAugGUCa -3'
miRNA:   3'- caUGCG---UGCGGUUCG---UACUGUugCGG- -5'
951 5' -52.3 NC_000902.1 + 13718 0.66 0.877239
Target:  5'- -aACGCuACGCCAucaaccGCAUGACugaaGCg -3'
miRNA:   3'- caUGCG-UGCGGUu-----CGUACUGuug-CGg -5'
951 5' -52.3 NC_000902.1 + 35382 0.66 0.876452
Target:  5'- aGU-CGCACGCUguucccacgucuuGAGCcggugcauguUGACAGCGCg -3'
miRNA:   3'- -CAuGCGUGCGG-------------UUCGu---------ACUGUUGCGg -5'
951 5' -52.3 NC_000902.1 + 54142 0.66 0.869261
Target:  5'- uUACGUacACGCU--GCAUGAUuucCGCCg -3'
miRNA:   3'- cAUGCG--UGCGGuuCGUACUGuu-GCGG- -5'
951 5' -52.3 NC_000902.1 + 20560 0.66 0.864352
Target:  5'- -aACGCccgcucuccagcucaACGCCAAuuGCAcGACGcccuaGCGCCa -3'
miRNA:   3'- caUGCG---------------UGCGGUU--CGUaCUGU-----UGCGG- -5'
951 5' -52.3 NC_000902.1 + 31637 0.66 0.861029
Target:  5'- gGUGCG-ACGUCAGGCGUGGCuaucaGUa -3'
miRNA:   3'- -CAUGCgUGCGGUUCGUACUGuug--CGg -5'
951 5' -52.3 NC_000902.1 + 10362 0.66 0.861029
Target:  5'- --cUGCACGCUAAcGUuUGACuuUGCCa -3'
miRNA:   3'- cauGCGUGCGGUU-CGuACUGuuGCGG- -5'
951 5' -52.3 NC_000902.1 + 23922 0.66 0.861029
Target:  5'- -cGCGUuuaGCGCCAcucuucccGCAUGGCGcaaaauCGCCg -3'
miRNA:   3'- caUGCG---UGCGGUu-------CGUACUGUu-----GCGG- -5'
951 5' -52.3 NC_000902.1 + 59385 0.67 0.834877
Target:  5'- -aACGC-CG-UAAGCAggaGCAACGCCa -3'
miRNA:   3'- caUGCGuGCgGUUCGUac-UGUUGCGG- -5'
951 5' -52.3 NC_000902.1 + 50157 0.67 0.834877
Target:  5'- gGUACagGCcCGCCuuGCccGUGGCAACGCg -3'
miRNA:   3'- -CAUG--CGuGCGGuuCG--UACUGUUGCGg -5'
951 5' -52.3 NC_000902.1 + 49015 0.67 0.825705
Target:  5'- gGUGCGCGCGC--AGC-UGGCAACcgauCCu -3'
miRNA:   3'- -CAUGCGUGCGguUCGuACUGUUGc---GG- -5'
951 5' -52.3 NC_000902.1 + 49316 0.67 0.825705
Target:  5'- gGUGCGguUGCCGGauauCGUGGCAgACGUCa -3'
miRNA:   3'- -CAUGCguGCGGUUc---GUACUGU-UGCGG- -5'
951 5' -52.3 NC_000902.1 + 55181 0.67 0.816322
Target:  5'- --uUGuCACGCC-AGCA-GGCGGCGUCu -3'
miRNA:   3'- cauGC-GUGCGGuUCGUaCUGUUGCGG- -5'
951 5' -52.3 NC_000902.1 + 238 0.67 0.816322
Target:  5'- ---aGCACGCauagguauGGCGUGACugauACGCUu -3'
miRNA:   3'- caugCGUGCGgu------UCGUACUGu---UGCGG- -5'
951 5' -52.3 NC_000902.1 + 4398 0.67 0.805769
Target:  5'- -cAUGCAggcUGCCAuuaucgaauggcaGGCAacUGGCGACGCUa -3'
miRNA:   3'- caUGCGU---GCGGU-------------UCGU--ACUGUUGCGG- -5'
951 5' -52.3 NC_000902.1 + 37147 0.68 0.794987
Target:  5'- -gACGCAcuggugcCGCUGAGCGcauccggugaaacUGuCAGCGCCg -3'
miRNA:   3'- caUGCGU-------GCGGUUCGU-------------ACuGUUGCGG- -5'
951 5' -52.3 NC_000902.1 + 36342 0.68 0.787011
Target:  5'- aGUACGgGCuugucGCCAGuGUAUGACGauAUGCCc -3'
miRNA:   3'- -CAUGCgUG-----CGGUU-CGUACUGU--UGCGG- -5'
951 5' -52.3 NC_000902.1 + 25711 0.7 0.646771
Target:  5'- aUGCGaccggguuaACGCCAuugAGCGUGAUAagGCGCUg -3'
miRNA:   3'- cAUGCg--------UGCGGU---UCGUACUGU--UGCGG- -5'
951 5' -52.3 NC_000902.1 + 55263 0.71 0.61315
Target:  5'- -gACGC-CGCCugcuGGCGUGACAAa-CCg -3'
miRNA:   3'- caUGCGuGCGGu---UCGUACUGUUgcGG- -5'
951 5' -52.3 NC_000902.1 + 50330 0.71 0.579681
Target:  5'- -cGCGUACGCCGgaugaaaaucaGGCcgGACGugGUg -3'
miRNA:   3'- caUGCGUGCGGU-----------UCGuaCUGUugCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.