miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9510 5' -51.6 NC_002531.1 + 40182 0.66 0.98515
Target:  5'- aCAGUguaacUAUAGACAUGAcGGAGauucGCCa -3'
miRNA:   3'- aGUCA-----AUGUCUGUACU-CCUCacc-CGG- -5'
9510 5' -51.6 NC_002531.1 + 30135 0.66 0.983252
Target:  5'- cUAGUgACAGACA--GGGAGUGGauuGCg -3'
miRNA:   3'- aGUCAaUGUCUGUacUCCUCACC---CGg -5'
9510 5' -51.6 NC_002531.1 + 12892 0.66 0.983252
Target:  5'- cCAGUUGCAGAUgaagGUGcGG-G-GGGCUc -3'
miRNA:   3'- aGUCAAUGUCUG----UACuCCuCaCCCGG- -5'
9510 5' -51.6 NC_002531.1 + 6788 0.66 0.981175
Target:  5'- gUCAGUUcauUGGAC-UGGGaGGUGGGCa -3'
miRNA:   3'- -AGUCAAu--GUCUGuACUCcUCACCCGg -5'
9510 5' -51.6 NC_002531.1 + 66772 0.67 0.964503
Target:  5'- -gAGUUGCGGAC-UGAaGAGUagaGGGUCu -3'
miRNA:   3'- agUCAAUGUCUGuACUcCUCA---CCCGG- -5'
9510 5' -51.6 NC_002531.1 + 49032 0.67 0.963461
Target:  5'- -----aACAGGCAcaauccccgggcccUGAuugccGGGGUGGGCCa -3'
miRNA:   3'- agucaaUGUCUGU--------------ACU-----CCUCACCCGG- -5'
9510 5' -51.6 NC_002531.1 + 89521 0.67 0.960949
Target:  5'- -aAGUgagaugACAGGCaAUGAccagGGGGUGGaGCCu -3'
miRNA:   3'- agUCAa-----UGUCUG-UACU----CCUCACC-CGG- -5'
9510 5' -51.6 NC_002531.1 + 35035 0.68 0.93951
Target:  5'- -gGGUUucuggGCAGAUcugccuuUGGGGAGUguuGGGCCa -3'
miRNA:   3'- agUCAA-----UGUCUGu------ACUCCUCA---CCCGG- -5'
9510 5' -51.6 NC_002531.1 + 79049 0.68 0.934461
Target:  5'- --uGUUGCAGcacauCGUGA-GAGUGGGCa -3'
miRNA:   3'- aguCAAUGUCu----GUACUcCUCACCCGg -5'
9510 5' -51.6 NC_002531.1 + 51150 0.73 0.743054
Target:  5'- gCAGUUGauaGGAUAUGAGGca-GGGCCc -3'
miRNA:   3'- aGUCAAUg--UCUGUACUCCucaCCCGG- -5'
9510 5' -51.6 NC_002531.1 + 42997 0.74 0.691338
Target:  5'- aCAGUcccuucUGCuGACAUGGGGuugGGGCCu -3'
miRNA:   3'- aGUCA------AUGuCUGUACUCCucaCCCGG- -5'
9510 5' -51.6 NC_002531.1 + 112201 1.14 0.002905
Target:  5'- aUCAGUUACAGACAUGAGGAGUGGGCCg -3'
miRNA:   3'- -AGUCAAUGUCUGUACUCCUCACCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.